Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb006260 Zea mays HOM05D000562 ORTHO05D000388 1.7e-91 339.3 173 100.0
Os03g0183500 Oryza sativa ssp. japonica HOM05D000690 ORTHO05D000388 1.0e-35 154.1 155 58.1
Haze_16130 Corylus avellana HOM05D000562 ORTHO05D000388 5.0e-11 72.0 148 33.1
Lj3g0026093 Lotus japonicus HOM05D000562 ORTHO05D000388 1.5e-10 70.5 138 33.3
Duzib192G0167 Durio zibethinus HOM05D000562 ORTHO05D000388 3.2e-10 69.3 134 33.6
Manes.11G013400 Manihot esculenta HOM05D000562 ORTHO05D000388 9.4e-10 67.8 137 33.6
Os08g0451200 Oryza sativa ssp. japonica HOM05D000562 ORTHO05D000388 1.6e-09 67.0 81 45.7
Duzib160G0349 Durio zibethinus HOM05D000562 ORTHO05D000388 2.7e-09 66.2 143 34.3
Thecc.06G129200 Theobroma cacao HOM05D000562 ORTHO05D000388 4.7e-09 65.5 113 34.5
Lalb_Chr04g0253871 Lupinus albus HOM05D000562 ORTHO05D000388 6.1e-09 65.1 132 31.1
ATR0099G052 Amborella trichopoda HOM05D000562 ORTHO05D000388 1.0e-08 64.3 133 31.6
Aqoxy7G04169 Aquilegia oxysepala HOM05D000562 ORTHO05D000388 1.0e-08 64.3 103 35.0
Gohir.A06G143300 Gossypium hirsutum HOM05D000562 ORTHO05D000388 1.4e-08 63.9 117 32.5
vmacro15081 Vaccinium macrocarpon HOM05D000562 ORTHO05D000388 1.4e-08 63.9 129 34.1
EL10Ac7g16484 Beta vulgaris HOM05D000562 ORTHO05D000388 1.8e-08 63.5 106 34.0
THA.LOC104810583 Tarenaya hassleriana HOM05D000562 ORTHO05D000388 1.8e-08 63.5 104 35.6
Atru.chr1.4111 Acer truncatum HOM05D000562 ORTHO05D000388 2.3e-08 63.2 152 29.6
TWI23G0953 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 2.3e-08 63.2 116 34.5
Duzib235G0305 Durio zibethinus HOM05D000562 ORTHO05D000388 3.0e-08 62.8 135 33.3
QL05p001408 Quercus lobata HOM05D000562 ORTHO05D000388 3.0e-08 62.8 133 32.3
TAR626G0390 Trochodendron aralioides HOM05D000562 ORTHO05D000388 3.0e-08 62.8 162 30.2
COL.COLO4_30856 Corchorus olitorius HOM05D000562 ORTHO05D000388 4.0e-08 62.4 100 38.0
Gohir.D06G149100 Gossypium hirsutum HOM05D000562 ORTHO05D000388 4.0e-08 62.4 117 31.6
Gorai.010G173600 Gossypium raimondii HOM05D000562 ORTHO05D000388 4.0e-08 62.4 117 31.6
Gorai.011G055700 Gossypium raimondii HOM05D000562 ORTHO05D000388 4.0e-08 62.4 147 31.3
CDE05G1343 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 5.2e-08 62.0 110 39.1
Glyma.16G013000 Glycine max HOM05D000562 ORTHO05D000388 5.2e-08 62.0 104 36.5
Gohir.A10G050600 Gossypium hirsutum HOM05D000562 ORTHO05D000388 5.2e-08 62.0 147 31.3
CiPaw.01G212200 Carya illinoinensis HOM05D000562 ORTHO05D000388 6.8e-08 61.6 117 33.3
Dinv20388 Davidia involucrata HOM05D000562 ORTHO05D000388 8.8e-08 61.2 122 35.2
Os09g0433800 Oryza sativa ssp. japonica HOM05D000562 ORTHO05D000388 8.8e-08 61.2 60 45.0
Phvul.010G124000 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 8.8e-08 61.2 99 38.4
Cpa.g.sc25.183 Carica papaya HOM05D000562 ORTHO05D000388 1.5e-07 60.5 100 35.0
Eucgr.J02600 Eucalyptus grandis HOM05D000562 ORTHO05D000388 1.5e-07 60.5 100 35.0
MD09G1173600 Malus domestica HOM05D000562 ORTHO05D000388 1.5e-07 60.5 120 30.0
vmacro08177 Vaccinium macrocarpon HOM05D000562 ORTHO05D000388 1.5e-07 60.5 128 28.9
vmacro18612 Vaccinium macrocarpon HOM05D000562 ORTHO05D000388 1.5e-07 60.5 74 39.2
MBI19_g32866_MAGBIO Magnolia biondii HOM05D000562 ORTHO05D000388 2.0e-07 60.1 134 34.3
Manes.04G150300 Manihot esculenta HOM05D000562 ORTHO05D000388 2.0e-07 60.1 123 31.7
Sed0020720 Sechium edule HOM05D000562 ORTHO05D000388 2.0e-07 60.1 51 47.1
VMungo0331G1346 Vigna mungo HOM05D000562 ORTHO05D000388 2.0e-07 60.1 99 37.4
DCAR_020463 Daucus carota HOM05D000690 ORTHO05D002679 2.6e-07 59.7 78 37.2
Thhalv10014483m.g Eutrema salsugineum HOM05D000690 ORTHO05D002679 2.6e-07 59.7 49 51.0
CiPaw.02G080500 Carya illinoinensis HOM05D000562 ORTHO05D000388 3.4e-07 59.3 124 29.0
Sabra03G0042800 Salix brachista HOM05D000562 ORTHO05D000388 3.4e-07 59.3 92 37.0
THA.LOC104799612 Tarenaya hassleriana HOM05D000690 ORTHO05D002679 3.4e-07 59.3 49 51.0
Zm00001eb245880 Zea mays HOM05D000562 ORTHO05D000388 3.4e-07 59.3 41 53.7
AL6G32260 Arabidopsis lyrata HOM05D000690 ORTHO05D002679 4.4e-07 58.9 49 53.1
MSTRG.22521 Avicennia marina HOM05D000562 ORTHO05D000388 4.4e-07 58.9 93 36.6
Medtr8g022950 Medicago truncatula HOM05D000562 ORTHO05D000388 4.4e-07 58.9 104 33.7
Nn3g20269 Nelumbo nucifera HOM05D000562 ORTHO05D000388 4.4e-07 58.9 132 32.6
PGR102G1247 Punica granatum HOM05D000562 ORTHO05D000388 4.4e-07 58.9 78 39.7
Carub.0006s1904 Capsella rubella HOM05D000690 ORTHO05D002679 5.7e-07 58.5 49 51.0
CsaV3_7G034000 Cucumis sativus L. HOM05D000562 ORTHO05D000388 5.7e-07 58.5 58 41.4
Gohir.D10G052100 Gossypium hirsutum HOM05D000562 ORTHO05D000388 5.7e-07 58.5 147 29.9
Potri.010G011700 Populus trichocarpa HOM05D000562 ORTHO05D000388 5.7e-07 58.5 130 30.8
Zm00001eb313760 Zea mays HOM05D000562 ORTHO05D000388 5.7e-07 58.5 141 31.9
AT5G20700 Arabidopsis thaliana HOM05D000690 ORTHO05D002679 7.5e-07 58.2 49 51.0
Dinv37825 Davidia involucrata HOM05D000562 ORTHO05D000388 7.5e-07 58.2 60 45.0
Eucgr.H03950 Eucalyptus grandis HOM05D000690 ORTHO05D000388 7.5e-07 58.2 113 30.1
Rhsim08G0009200 Rhododendron simsii HOM05D000562 ORTHO05D000388 7.5e-07 58.2 61 39.3
Aqoxy7G01008 Aquilegia oxysepala HOM05D000690 ORTHO05D002679 9.8e-07 57.8 51 49.0
MELO3C024312.2 Cucumis melo HOM05D000562 ORTHO05D000388 9.8e-07 57.8 111 28.8
TPR.G27482 Trifolium pratense HOM05D000562 ORTHO05D000388 9.8e-07 57.8 109 26.6
Glyma.07G044900 Glycine max HOM05D000562 ORTHO05D000388 1.3e-06 57.4 111 34.2
MD17G1153400 Malus domestica HOM05D000562 ORTHO05D000388 1.3e-06 57.4 116 29.3
Rhsim08G0243900 Rhododendron simsii HOM05D000562 ORTHO05D000388 1.3e-06 57.4 106 34.9
TAR383G0856 Trochodendron aralioides HOM05D000562 ORTHO05D000388 1.3e-06 57.4 125 29.6
A02p06440 Brassica napus HOM05D000690 ORTHO05D002679 1.7e-06 57.0 49 51.0
A10p19340 Brassica napus HOM05D000690 ORTHO05D002679 1.7e-06 57.0 49 51.0
BNapus_Darmor_BZH_scaffold_38p01380 Brassica napus HOM05D000690 ORTHO05D002679 1.7e-06 57.0 49 51.0
BraA02t05589Z Brassica rapa HOM05D000690 ORTHO05D002679 1.7e-06 57.0 49 51.0
BraA10t44010Z Brassica rapa HOM05D000690 ORTHO05D002679 1.7e-06 57.0 49 51.0
CSS0009367 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 1.7e-06 57.0 56 46.4
AUR62001415 Chenopodium quinoa HOM05D000562 ORTHO05D000388 1.7e-06 57.0 52 48.1
Migut.D00916 Erythranthe guttata HOM05D000562 ORTHO05D000388 1.7e-06 57.0 134 26.1
Oeu059022.1 Olea europaea HOM05D000562 ORTHO05D000388 1.7e-06 57.0 128 32.0
HPP92_009330 Vanilla planifolia HOM05D000562 ORTHO05D000388 1.7e-06 57.0 155 31.6
Aa31LG4G8080 Aethionema arabicum HOM05D000562 ORTHO05D000388 2.2e-06 56.6 97 34.0
BcaC04g19460 Brassica carinata HOM05D000690 ORTHO05D002679 2.2e-06 56.6 49 51.0
C09p55530 Brassica napus HOM05D000690 ORTHO05D002679 2.2e-06 56.6 49 51.0
BolC9t58417H Brassica oleracea HOM05D000690 ORTHO05D002679 2.2e-06 56.6 49 51.0
ClCG09G001330 Citrullus lanatus HOM05D000562 ORTHO05D000388 2.2e-06 56.6 104 28.8
Ciclev10006176m.g Citrus clementina HOM05D000562 ORTHO05D000388 2.2e-06 56.6 131 29.0
Peaxi162Scf00038g02119 Petunia axillaris HOM05D000562 ORTHO05D000388 2.2e-06 56.6 59 45.8
Psat4g165880 Pisum sativum HOM05D000562 ORTHO05D000388 2.2e-06 56.6 51 43.1
Potri.003G071900 Populus trichocarpa HOM05D000562 ORTHO05D000388 2.2e-06 56.6 83 37.3
Solyc12g017850.2 Solanum lycopersicum HOM05D000690 ORTHO05D002679 2.2e-06 56.6 85 35.3
Sopen12g008660 Solanum pennellii HOM05D000690 ORTHO05D002679 2.2e-06 56.6 85 35.3
Zm00001eb165470 Zea mays HOM05D000690 ORTHO05D000388 2.2e-06 56.6 40 55.0
Actinidia07569 Actinidia chinensis HOM05D000690 ORTHO05D002679 2.8e-06 56.2 50 46.0
BcaB05g22818 Brassica carinata HOM05D000690 ORTHO05D002679 2.8e-06 56.2 47 51.1
Glyma.05G098400 Glycine max HOM05D000562 ORTHO05D000388 2.8e-06 56.2 111 34.2
Gohir.A02G050300 Gossypium hirsutum HOM05D000562 ORTHO05D000388 2.8e-06 56.2 112 31.2
Gohir.D02G055400 Gossypium hirsutum HOM05D000562 ORTHO05D000388 2.8e-06 56.2 112 32.1
Gorai.005G061300 Gossypium raimondii HOM05D000562 ORTHO05D000388 2.8e-06 56.2 112 32.1
Lalb_Chr17g0343321 Lupinus albus HOM05D000562 ORTHO05D000388 2.8e-06 56.2 59 39.0
Phvul.009G250000 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 2.8e-06 56.2 103 31.1
RcHm_v2.0_Chr2g0147731 Rosa chinensis HOM05D000562 ORTHO05D000388 2.8e-06 56.2 113 31.0
BcaB03g14231 Brassica carinata HOM05D000562 ORTHO05D000388 3.7e-06 55.8 52 42.3
BcaB08g36520 Brassica carinata HOM05D000690 ORTHO05D002679 3.7e-06 55.8 49 51.0
CSS0046205 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 3.7e-06 55.8 109 33.9
CiPaw.01G146100 Carya illinoinensis HOM05D000562 ORTHO05D000388 3.7e-06 55.8 106 30.2
Ciclev10026710m.g Citrus clementina HOM05D000562 ORTHO05D000388 3.7e-06 55.8 125 32.0
DCAR_004463 Daucus carota HOM05D000750 ORTHO05D000714 3.7e-06 55.8 108 32.4
PSO724G0260 Papaver somniferum HOM05D000562 ORTHO05D000388 3.7e-06 55.8 51 45.1
Peaxi162Scf00320g00121 Petunia axillaris HOM05D000690 ORTHO05D002679 3.7e-06 55.8 70 35.7
Psat0s2945g0080 Pisum sativum HOM05D000690 ORTHO05D002679 3.7e-06 55.8 49 49.0
THA.LOC104810989 Tarenaya hassleriana HOM05D000690 ORTHO05D002679 3.7e-06 55.8 65 40.0
TPR.G18152 Trifolium pratense HOM05D000562 ORTHO05D000388 3.7e-06 55.8 58 36.2
TWI34G1037 Tripterygium wilfordii HOM05D000690 ORTHO05D002679 3.7e-06 55.8 76 36.8
arahy.Tifrunner.gnm1.ann1.GQ96QH Arachis hypogaea HOM05D000690 ORTHO05D002679 4.9e-06 55.5 51 47.1
CARHR192110 Cardamine hirsuta HOM05D000690 ORTHO05D002679 4.9e-06 55.5 49 46.9
Nitab4.5_0005753g0020 Nicotiana tabacum HOM05D000690 ORTHO05D002679 4.9e-06 55.5 49 42.9
Oeu008394.1 Olea europaea HOM05D000562 ORTHO05D000388 4.9e-06 55.5 51 45.1
Potri.001G163400 Populus trichocarpa HOM05D000562 ORTHO05D000388 4.9e-06 55.5 65 38.5
QL05p001413 Quercus lobata HOM05D000562 ORTHO05D000388 4.9e-06 55.5 99 35.4
SalBow6G0007 Salvia bowleyana HOM05D000690 ORTHO05D002679 4.9e-06 55.5 56 42.9
SEGI_16785 Sequoiadendron giganteum HOM05D000562 ORTHO05D000388 4.9e-06 55.5 68 42.6
THA.LOC104822618 Tarenaya hassleriana HOM05D000562 ORTHO05D000388 4.9e-06 55.5 54 46.3
TAR383G0298 Trochodendron aralioides HOM05D000690 ORTHO05D002679 4.9e-06 55.5 50 46.0
A06p38570 Brassica napus HOM05D000690 ORTHO05D000388 6.3e-06 55.1 96 29.2
BraA06t26772Z Brassica rapa HOM05D000690 ORTHO05D000388 6.3e-06 55.1 96 29.2
Duzib212G0779 Durio zibethinus HOM05D000562 ORTHO05D000388 6.3e-06 55.1 103 28.2
Lsat_1_v5_gn_8_85861 Lactuca sativa HOM05D000690 ORTHO05D002679 6.3e-06 55.1 55 45.5
SMO293G0022 Selaginella moellendorffii HOM05D000562 ORTHO05D000388 6.3e-06 55.1 65 43.1
VMungo1215G0545 Vigna mungo HOM05D000562 ORTHO05D000388 6.3e-06 55.1 100 28.0
Aa31LG1G13980 Aethionema arabicum HOM05D000690 ORTHO05D002679 8.3e-06 54.7 49 44.9
Aa31sc105G120 Aethionema arabicum HOM05D000562 ORTHO05D000388 8.3e-06 54.7 115 36.5
Cfa015417 Carpinus fangiana HOM05D000562 ORTHO05D000388 8.3e-06 54.7 101 29.7
FAN05G4070 Fragaria x ananassa HOM05D000562 ORTHO05D000388 8.3e-06 54.7 113 33.6
Hma1.2p1_0263F.1_g105470 Hydrangea macrophylla HOM05D000690 ORTHO05D002679 8.3e-06 54.7 46 50.0
MBI18_g25342_MAGBIO Magnolia biondii HOM05D000562 ORTHO05D000388 8.3e-06 54.7 95 27.4
Phvul.003G096300 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 8.3e-06 54.7 100 27.0
PGSC0003DMG400020401 Solanum tuberosum HOM05D000690 ORTHO05D002679 8.3e-06 54.7 85 34.1
Zm00001eb098640 Zea mays HOM05D000562 ORTHO05D000388 8.3e-06 54.7 44 54.5


User provided reference genes

Program Settings