Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb006120 Zea mays HOM05D000842 ORTHO05D000650 1.9e-75 285.8 151 100.0
Zm00001eb054560 Zea mays HOM05D000842 ORTHO05D000650 1.9e-75 285.8 151 100.0
Zm00001eb330870 Zea mays HOM05D000842 ORTHO05D000650 1.9e-75 285.8 151 100.0
Zm00001eb041110 Zea mays HOM05D000842 ORTHO05D000650 8.9e-73 276.9 151 98.0
Zm00001eb325670 Zea mays HOM05D000842 ORTHO05D000650 8.9e-73 276.9 151 98.0
Zm00001eb245200 Zea mays HOM05D000842 ORTHO05D000650 2.4e-62 242.3 140 94.3
Aqoxy3G00304 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 2.4e-17 92.8 149 36.2
DCAR_026382 Daucus carota HOM05D000842 ORTHO05D000650 7.7e-16 87.8 117 37.6
ATR0121G006 Amborella trichopoda HOM05D000842 ORTHO05D000650 1.0e-15 87.4 120 40.0
ATR0307G011 Amborella trichopoda HOM05D000842 ORTHO05D000650 1.0e-15 87.4 120 37.5
MBI13_g00889_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 2.2e-15 86.3 118 36.4
Nn3g17833 Nelumbo nucifera HOM05D000842 ORTHO05D000650 2.2e-15 86.3 128 38.3
Nn3g17835 Nelumbo nucifera HOM05D000842 ORTHO05D000650 2.2e-15 86.3 128 38.3
Manes.11G027300 Manihot esculenta HOM05D000842 ORTHO05D000650 6.5e-15 84.7 118 39.0
TAR626G0918 Trochodendron aralioides HOM05D000842 ORTHO05D000650 6.5e-15 84.7 138 34.8
Oeu002510.1 Olea europaea HOM05D000842 ORTHO05D000650 1.1e-14 84.0 118 35.6
SGA_v2.0_scaffold71G23772 Striga asiatica HOM05D000842 ORTHO05D000650 1.5e-14 83.6 143 35.7
HPP92_014257 Vanilla planifolia HOM05D000842 ORTHO05D000650 1.5e-14 83.6 118 36.4
GSVIVG01016844001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.9e-14 83.2 118 36.4
CDE08G1357 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 4.2e-14 82.0 118 34.7
Dinv30387 Davidia involucrata HOM05D000842 ORTHO05D000650 4.2e-14 82.0 118 35.6
Dinv37922 Davidia involucrata HOM05D000842 ORTHO05D000650 4.2e-14 82.0 118 34.7
Hma1.2p1_0388F.1_g142260 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 4.2e-14 82.0 121 36.4
TAR383G0631 Trochodendron aralioides HOM05D000842 ORTHO05D000650 4.2e-14 82.0 138 34.8
Gohir.A02G115500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 5.5e-14 81.6 118 35.6
Gohir.D03G056500 Gossypium hirsutum HOM05D000842 ORTHO05D000650 5.5e-14 81.6 118 35.6
Gorai.003G059600 Gossypium raimondii HOM05D000842 ORTHO05D000650 5.5e-14 81.6 118 35.6
Migut.D00973 Erythranthe guttata HOM05D000842 ORTHO05D000650 7.2e-14 81.3 125 35.2
Nn2g14738 Nelumbo nucifera HOM05D000842 ORTHO05D000650 7.2e-14 81.3 118 34.7
Peaxi162Scf00038g01435 Petunia axillaris HOM05D000842 ORTHO05D000650 7.2e-14 81.3 121 35.5
TAR624G1368 Trochodendron aralioides HOM05D000842 ORTHO05D000650 7.2e-14 81.3 141 36.2
CSS0002312 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.4e-14 80.9 121 34.7
CSS0009776 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.4e-14 80.9 121 34.7
CSS0040988 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.4e-14 80.9 121 34.7
Nitab4.5_0005281g0020 Nicotiana tabacum HOM05D000842 ORTHO05D000650 9.4e-14 80.9 121 34.7
Lj5C46T6 Lonicera japonica HOM05D000842 ORTHO05D000650 1.2e-13 80.5 137 33.6
MD17G1175100 Malus domestica HOM05D000842 ORTHO05D000650 1.2e-13 80.5 123 35.8
Rhsim12G0205300 Rhododendron simsii HOM05D000842 ORTHO05D000650 1.2e-13 80.5 121 34.7
Actinidia39116 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.6e-13 80.1 121 33.9
VMungo1080G1632 Vigna mungo HOM05D000842 ORTHO05D000650 1.6e-13 80.1 118 34.7
Aqoxy7G04070 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 2.1e-13 79.7 118 34.7
Eucgr.J02870 Eucalyptus grandis HOM05D000842 ORTHO05D000650 2.7e-13 79.3 121 35.5
Manes.04G139000 Manihot esculenta HOM05D000842 ORTHO05D000650 2.7e-13 79.3 118 36.4
vmacro16990 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 2.7e-13 79.3 127 33.1
Hma1.2p1_1116F.1_g258940 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 3.6e-13 79.0 117 33.3
SEGI_02504 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 3.6e-13 79.0 131 34.4
Thecc.06G109500 Theobroma cacao HOM05D000842 ORTHO05D000650 3.6e-13 79.0 118 34.7
Actinidia09026 Actinidia chinensis HOM05D000842 ORTHO05D000650 4.7e-13 78.6 121 33.1
CANSAT64G1462 Cannabis sativa HOM05D000842 ORTHO05D000650 4.7e-13 78.6 118 36.4
CiPaw.01G225800 Carya illinoinensis HOM05D000842 ORTHO05D000650 4.7e-13 78.6 120 34.2
Nn6g35459 Nelumbo nucifera HOM05D000093 ORTHO05D000605 4.7e-13 78.6 118 33.1
QL05p014694 Quercus lobata HOM05D000842 ORTHO05D000650 4.7e-13 78.6 126 34.9
PGSC0003DMG400002502 Solanum tuberosum HOM05D000842 ORTHO05D000650 4.7e-13 78.6 118 36.4
Atru.chr1.3678 Acer truncatum HOM05D000842 ORTHO05D000650 6.1e-13 78.2 121 33.1
vmacro22857 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 6.1e-13 78.2 125 32.0
AT1G55170 Arabidopsis thaliana HOM05D000842 ORTHO05D000650 1.0e-12 77.4 121 36.4
CAN.G1389.8 Capsicum annuum HOM05D000842 ORTHO05D000650 1.0e-12 77.4 118 35.6
Cpa.g.sc25.65 Carica papaya HOM05D000842 ORTHO05D000650 1.0e-12 77.4 121 34.7
Sopen03g040310 Solanum pennellii HOM05D000842 ORTHO05D000650 1.0e-12 77.4 118 35.6
AagrBONN_evm.TU.Sc2ySwM_228.3775 Anthoceros agrestis HOM05D000842 ORTHO05D000650 1.4e-12 77.0 128 35.2
Os08g0430100 Oryza sativa ssp. japonica HOM05D000842 ORTHO05D000650 1.4e-12 77.0 130 34.6
Cc11_g10160 Coffea canephora HOM05D000842 ORTHO05D000650 1.8e-12 76.6 117 33.3
FAN09G1652 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.8e-12 76.6 123 30.9
Glyma.01G128750 Glycine max HOM05D000842 ORTHO05D000650 1.8e-12 76.6 121 32.2
SalBow6G4852 Salvia bowleyana HOM05D000842 ORTHO05D000650 1.8e-12 76.6 137 33.6
Solyc03g121500.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 1.8e-12 76.6 118 35.6
Ca_01191_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 2.3e-12 76.3 121 31.4
RcHm_v2.0_Chr2g0142861 Rosa chinensis HOM05D000842 ORTHO05D000650 2.3e-12 76.3 123 32.5
TAR622G0105 Trochodendron aralioides HOM05D000842 ORTHO05D000650 2.3e-12 76.3 130 34.6
BcaB07g33230 Brassica carinata HOM05D000842 ORTHO05D000650 3.0e-12 75.9 121 35.5
Cc04_g02040 Coffea canephora HOM05D000842 ORTHO05D000650 3.0e-12 75.9 121 32.2
FvH4_6g33160 Fragaria vesca HOM05D000842 ORTHO05D000650 3.0e-12 75.9 123 30.9
SEGI_10988 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 4.0e-12 75.5 147 32.7
BcaC08g43611 Brassica carinata HOM05D000842 ORTHO05D000650 6.7e-12 74.7 121 35.5
C06p10130 Brassica napus HOM05D000842 ORTHO05D000650 6.7e-12 74.7 121 35.5
Sc15g0000100 Simmondsia chinensis HOM05D000842 ORTHO05D000650 6.7e-12 74.7 121 33.1
A06p00370 Brassica napus HOM05D000842 ORTHO05D000650 8.8e-12 74.3 121 35.5
BraA06t23252Z Brassica rapa HOM05D000842 ORTHO05D000650 8.8e-12 74.3 121 35.5
AL1G63210 Arabidopsis lyrata HOM05D000842 ORTHO05D000650 1.2e-11 73.9 110 38.2
ECA234G1704 Erigeron canadensis HOM05D000842 ORTHO05D000650 1.2e-11 73.9 134 35.1
HanXRQChr02g0031721 Helianthus annuus HOM05D000842 ORTHO05D000650 1.2e-11 73.9 121 32.2
HanXRQChr12g0360621 Helianthus annuus HOM05D000842 ORTHO05D000650 1.2e-11 73.9 137 32.8
RcHm_v2.0_Chr4g0435211 Rosa chinensis HOM05D000842 ORTHO05D000650 1.2e-11 73.9 119 36.1
Aa31LG10G960 Aethionema arabicum HOM05D000842 ORTHO05D000650 1.5e-11 73.6 121 33.9
FAN14G1725 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.5e-11 73.6 123 30.9
Psat5g293360 Pisum sativum HOM05D000842 ORTHO05D000650 2.0e-11 73.2 121 32.2
Ah.15g095600 Amaranthus hybridus HOM05D000842 ORTHO05D000650 2.6e-11 72.8 118 34.7
Sabra03G0025600 Salix brachista HOM05D000842 ORTHO05D000650 2.6e-11 72.8 116 32.8
Sp1g40840 Schrenkiella parvula HOM05D000842 ORTHO05D000650 2.6e-11 72.8 118 35.6
FAN02G3656 Fragaria x ananassa HOM05D000842 ORTHO05D000650 3.3e-11 72.4 123 30.9
MD13G1042300 Malus domestica HOM05D000842 ORTHO05D000650 3.3e-11 72.4 117 35.0
Potri.003G037900 Populus trichocarpa HOM05D000842 ORTHO05D000650 3.3e-11 72.4 116 32.8
DCAR_007618 Daucus carota HOM05D000842 ORTHO05D000650 4.4e-11 72.0 98 36.7
unitig_32.g11576 Utricularia gibba HOM05D000842 ORTHO05D000650 4.4e-11 72.0 117 32.5
Zm00001eb093150 Zea mays HOM05D000842 ORTHO05D000650 4.4e-11 72.0 124 36.3
Nitab4.5_0004364g0040 Nicotiana tabacum HOM05D000250 ORTHO05D000650 7.5e-11 71.2 134 30.6
Lalb_Chr22g0351761 Lupinus albus HOM05D000842 ORTHO05D000650 9.7e-11 70.9 117 31.6
Phvul.005G160200 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 9.7e-11 70.9 118 33.1
Rhsim09G0108200 Rhododendron simsii HOM05D000842 ORTHO05D000650 1.3e-10 70.5 130 29.2
Zm00001eb196520 Zea mays HOM05D000842 ORTHO05D000650 1.7e-10 70.1 119 37.0
BolC6t36774H Brassica oleracea HOM05D000842 ORTHO05D000650 2.8e-10 69.3 98 38.8
Glyma.15G023600 Glycine max HOM05D000842 ORTHO05D000650 2.8e-10 69.3 118 31.4
MD16G1043100 Malus domestica HOM05D000842 ORTHO05D000650 2.8e-10 69.3 117 34.2
Carub.0001s4367 Capsella rubella HOM05D000842 ORTHO05D000650 3.7e-10 68.9 118 34.7
CARHR044790 Cardamine hirsuta HOM05D000842 ORTHO05D000650 4.8e-10 68.6 121 33.9
MBI03_g33624_MAGBIO Magnolia biondii HOM05D000842 ORTHO05D000650 4.8e-10 68.6 126 33.3
CiPaw.02G141000 Carya illinoinensis HOM05D000842 ORTHO05D000650 6.3e-10 68.2 117 30.8
Glyma.13G350800 Glycine max HOM05D000842 ORTHO05D000650 1.4e-09 67.0 118 30.5
Cfa018597 Carpinus fangiana HOM05D000842 ORTHO05D000650 1.8e-09 66.6 128 34.4
Haze_17480 Corylus avellana HOM05D000842 ORTHO05D000650 1.8e-09 66.6 128 34.4
Prupe.3G051000 Prunus persica HOM05D000842 ORTHO05D000650 1.8e-09 66.6 123 30.1
vmacro10557 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 1.8e-09 66.6 133 29.3
Hma1.2p1_0061F.1_g033940 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 3.1e-09 65.9 125 33.6
TAR633G2814 Trochodendron aralioides HOM05D000842 ORTHO05D000650 3.1e-09 65.9 126 28.6
Lj3g0025148 Lotus japonicus HOM05D000842 ORTHO05D000650 4.1e-09 65.5 121 29.8
Peaxi162Scf00382g00068 Petunia axillaris HOM05D000842 ORTHO05D000650 4.1e-09 65.5 127 32.3
CsaV3_4G032790 Cucumis sativus L. HOM05D000842 ORTHO05D000650 7.0e-09 64.7 127 30.7
PGR102G2742 Punica granatum HOM05D000842 ORTHO05D000650 7.0e-09 64.7 128 31.2
Dinv21087 Davidia involucrata HOM05D000842 ORTHO05D000650 9.1e-09 64.3 128 29.7
Hund20860 Selenicereus undatus HOM05D000842 ORTHO05D000650 9.1e-09 64.3 121 31.4
Sc03g0010740 Simmondsia chinensis HOM05D000842 ORTHO05D000650 1.2e-08 63.9 126 31.7
Eucgr.B02221 Eucalyptus grandis HOM05D000842 ORTHO05D000650 1.6e-08 63.5 129 29.5
Peaxi162Scf00038g00149 Petunia axillaris HOM05D000250 ORTHO05D000650 1.6e-08 63.5 104 33.7
Lsat_1_v5_gn_5_133560 Lactuca sativa HOM05D000842 ORTHO05D000650 2.7e-08 62.8 143 33.6
unitig_10.g29678 Utricularia gibba HOM05D000842 ORTHO05D000650 2.7e-08 62.8 118 28.8
unitig_8.g3980 Utricularia gibba HOM05D000842 ORTHO05D000650 2.7e-08 62.8 118 28.8
MSTRG.22592 Avicennia marina HOM05D000842 ORTHO05D000650 4.5e-08 62.0 121 30.6
Nn2g10984 Nelumbo nucifera HOM05D000842 ORTHO05D000650 4.5e-08 62.0 126 28.6
EL10Ac4g08436 Beta vulgaris HOM05D000842 ORTHO05D000650 7.7e-08 61.2 127 28.3
COL.COLO4_10978 Corchorus olitorius HOM05D000842 ORTHO05D000650 7.7e-08 61.2 120 30.8
Nitab4.5_0003373g0070 Nicotiana tabacum HOM05D000842 ORTHO05D000650 7.7e-08 61.2 127 30.7
ATR0680G176 Amborella trichopoda HOM05D000842 ORTHO05D000650 1.3e-07 60.5 121 26.4
CDE06G1580 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.3e-07 60.5 150 25.3
Dinv28686 Davidia involucrata HOM05D000842 ORTHO05D000650 1.3e-07 60.5 126 30.2
AUR62013943 Chenopodium quinoa HOM05D000842 ORTHO05D000650 1.7e-07 60.1 127 27.6
BraA05t20657Z Brassica rapa HOM05D000842 ORTHO05D000650 2.2e-07 59.7 108 34.3
AUR62019667 Chenopodium quinoa HOM05D000842 ORTHO05D000650 2.2e-07 59.7 127 27.6
Gohir.D10G062000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 2.2e-07 59.7 118 30.5
BcaB02g10841 Brassica carinata HOM05D000842 ORTHO05D000650 2.9e-07 59.3 92 34.8
MELO3C011573.2 Cucumis melo HOM05D000842 ORTHO05D000650 2.9e-07 59.3 117 31.6
CsaV3_6G003520 Cucumis sativus L. HOM05D000842 ORTHO05D000650 2.9e-07 59.3 117 30.8
CSS0047783 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 3.8e-07 58.9 120 28.3
COL.COLO4_03606 Corchorus olitorius HOM05D000842 ORTHO05D000650 3.8e-07 58.9 127 27.6
Duzib160G0845 Durio zibethinus HOM05D000842 ORTHO05D000650 3.8e-07 58.9 118 30.5
ClCG08G005330 Citrullus lanatus HOM05D000842 ORTHO05D000650 5.0e-07 58.5 117 30.8
Ciclev10026255m.g Citrus clementina HOM05D000842 ORTHO05D000650 5.0e-07 58.5 118 31.4
Gorai.011G066200 Gossypium raimondii HOM05D000842 ORTHO05D000650 5.0e-07 58.5 118 29.7
PSO017G6167 Papaver somniferum HOM05D000842 ORTHO05D000650 6.5e-07 58.2 138 27.5
Hund14449 Selenicereus undatus HOM05D000842 ORTHO05D000650 6.5e-07 58.2 121 32.2
Sc12g0010200 Simmondsia chinensis HOM05D000842 ORTHO05D000650 6.5e-07 58.2 134 29.9
Thecc.07G134900 Theobroma cacao HOM05D000842 ORTHO05D000650 6.5e-07 58.2 127 26.8
EL10Ac7g15775 Beta vulgaris HOM05D000842 ORTHO05D000650 8.5e-07 57.8 121 30.6
Gohir.A10G060900 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.5e-07 57.8 113 29.2
Gohir.D01G037700 Gossypium hirsutum HOM05D000842 ORTHO05D000650 8.5e-07 57.8 127 26.8
Gorai.002G046000 Gossypium raimondii HOM05D000842 ORTHO05D000650 8.5e-07 57.8 127 26.8
Pp3c8_1900 Physcomitrium patens HOM05D000842 ORTHO05D000650 1.1e-06 57.4 119 26.9
Gohir.A07G035600 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.5e-06 57.0 120 29.2
Lj3g0009813 Lotus japonicus HOM05D000842 ORTHO05D000650 1.9e-06 56.6 124 29.0
arahy.Tifrunner.gnm1.ann1.22LF0C Arachis hypogaea HOM05D000842 ORTHO05D000650 2.5e-06 56.2 118 29.7
arahy.Tifrunner.gnm1.ann1.GZNN80 Arachis hypogaea HOM05D000842 ORTHO05D000650 2.5e-06 56.2 118 29.7
Lalb_Chr14g0372831 Lupinus albus HOM05D000842 ORTHO05D000650 2.5e-06 56.2 147 25.9
TAR371G0119 Trochodendron aralioides HOM05D000842 ORTHO05D000650 2.5e-06 56.2 128 31.2
Ah.08g216140 Amaranthus hybridus HOM05D000842 ORTHO05D000650 3.2e-06 55.8 118 28.8
Migut.J01408 Erythranthe guttata HOM05D000842 ORTHO05D000650 3.2e-06 55.8 121 30.6
Gohir.A04G045400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 3.2e-06 55.8 121 24.0
Gohir.D05G337400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 3.2e-06 55.8 121 24.0
Gorai.001G041700 Gossypium raimondii HOM05D000842 ORTHO05D000650 3.2e-06 55.8 120 29.2
Gorai.009G361700 Gossypium raimondii HOM05D000842 ORTHO05D000650 3.2e-06 55.8 121 24.0
Os12g0193100 Oryza sativa ssp. japonica HOM05D000842 ORTHO05D000650 4.2e-06 55.5 117 29.1
CsaV3_2G007820 Cucumis sativus L. HOM05D000842 ORTHO05D000650 5.5e-06 55.1 142 25.4
PSO210G6240 Papaver somniferum HOM05D000842 ORTHO05D000650 5.5e-06 55.1 122 26.2
Hund25065 Selenicereus undatus HOM05D000842 ORTHO05D000650 5.5e-06 55.1 137 25.5
SGA_v2.0_scaffold45G16978 Striga asiatica HOM05D000842 ORTHO05D000650 5.5e-06 55.1 143 27.3
Cc06_g14140 Coffea canephora HOM05D000842 ORTHO05D000650 7.2e-06 54.7 127 29.1
Gohir.A01G047000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 7.2e-06 54.7 127 26.0
Gohir.D07G039600 Gossypium hirsutum HOM05D000842 ORTHO05D000650 7.2e-06 54.7 120 28.3
Manes.01G107000 Manihot esculenta HOM05D000842 ORTHO05D000650 7.2e-06 54.7 136 25.7
CSS0048360 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 9.4e-06 54.3 126 28.6
CDE08G0333 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 9.4e-06 54.3 84 33.3
Solyc05g009290.4 Solanum lycopersicum HOM05D000842 ORTHO05D000650 9.4e-06 54.3 127 29.1
Sopen05g005040 Solanum pennellii HOM05D000842 ORTHO05D000650 9.4e-06 54.3 127 29.1


User provided reference genes

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