Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 1.3e-104 383.3 215 100.0
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 3.9e-29 132.5 207 45.9
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 4.7e-27 125.6 207 43.5
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 3.1e-26 122.9 207 42.0
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 2.6e-25 119.8 210 42.4
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 5.8e-25 118.6 172 43.0
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 7.6e-25 118.2 210 42.4
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 9.9e-25 117.9 207 42.5
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.7e-24 117.1 207 42.5
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 2.9e-24 116.3 211 39.8
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 4.9e-24 115.5 207 40.1
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 4.9e-24 115.5 210 41.9
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 1.9e-23 113.6 208 41.3
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 2.4e-23 113.2 207 39.6
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 2.4e-23 113.2 207 41.1
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 3.2e-23 112.8 207 40.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 5.4e-23 112.1 192 41.7
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 9.3e-23 111.3 207 39.6
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 1.2e-22 110.9 207 40.6
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.6e-22 110.5 211 38.9
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.1e-22 110.2 206 39.8
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.7e-22 109.8 207 38.6
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.7e-22 109.8 207 40.1
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 2.7e-22 109.8 209 40.2
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.5e-22 109.4 207 39.6
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 3.5e-22 109.4 211 37.9
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 6.0e-22 108.6 207 39.1
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 7.8e-22 108.2 191 40.8
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 1.0e-21 107.8 192 41.7
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.0e-21 107.8 203 39.9
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.0e-21 107.8 203 36.9
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.3e-21 107.5 203 41.9
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 1.3e-21 107.5 207 39.1
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.7e-21 107.1 203 38.4
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.7e-21 107.1 207 39.6
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 3.9e-21 105.9 203 37.9
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 5.1e-21 105.5 207 38.6
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 6.6e-21 105.1 207 39.1
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 8.7e-21 104.8 207 39.6
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.5e-20 104.0 165 40.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.9e-20 103.6 203 36.0
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 2.5e-20 103.2 210 38.6
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 5.6e-20 102.1 207 39.1
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 7.3e-20 101.7 210 37.6
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 7.3e-20 101.7 207 39.1
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 7.3e-20 101.7 203 36.9
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.3e-19 100.9 208 37.0
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 3.6e-19 99.4 203 38.4
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.8e-19 99.0 181 40.9
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 4.8e-19 99.0 207 38.2
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 6.2e-19 98.6 193 39.4
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 6.2e-19 98.6 192 37.5
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 3.1e-18 96.3 207 37.7
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 9.0e-18 94.7 210 37.6
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 5.8e-17 92.0 206 38.8
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 9.9e-17 91.3 202 35.1
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 8.4e-16 88.2 153 43.8
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.5e-14 82.8 203 37.9
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 6.0e-14 82.0 153 39.9
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 7.9e-14 81.6 207 35.7
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 4.3e-12 75.9 206 33.0
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.6e-11 73.9 183 35.0
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 5.3e-10 68.9 193 32.1
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 9.0e-10 68.2 207 31.9
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 5.8e-09 65.5 199 30.2


User provided reference genes

Program Settings