Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 4.2e-51 204.5 112 100.0
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 5.9e-29 131.0 106 72.6
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 1.1e-22 110.2 104 53.8
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.4e-22 109.8 105 52.4
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 1.6e-21 106.3 103 52.4
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 1.6e-21 106.3 106 51.9
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 2.0e-21 105.9 105 50.5
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 4.5e-21 104.8 109 52.3
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 5.9e-21 104.4 104 55.8
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.0e-20 103.6 107 50.5
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 3.8e-20 101.7 104 52.9
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 8.5e-20 100.5 104 52.9
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 1.5e-19 99.8 103 54.4
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 1.5e-19 99.8 106 50.9
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 4.2e-19 98.2 102 53.9
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 5.5e-19 97.8 107 50.5
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 5.5e-19 97.8 107 50.5
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 5.5e-19 97.8 104 50.0
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 7.2e-19 97.4 103 51.5
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 9.4e-19 97.1 103 47.6
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 9.4e-19 97.1 104 51.0
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 9.4e-19 97.1 103 47.6
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 9.4e-19 97.1 104 50.0
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 1.2e-18 96.7 103 48.5
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 2.1e-18 95.9 107 51.4
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.7e-18 95.5 103 53.4
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.6e-18 95.1 104 47.1
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 3.6e-18 95.1 104 51.9
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 3.6e-18 95.1 103 52.4
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 4.7e-18 94.7 104 49.0
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 6.1e-18 94.4 106 50.9
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 8.0e-18 94.0 104 51.9
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 8.0e-18 94.0 98 50.0
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.0e-17 93.6 102 51.0
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 1.4e-17 93.2 101 44.6
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 1.8e-17 92.8 101 50.5
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.8e-17 92.8 102 49.0
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 6.7e-17 90.9 101 46.5
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 1.2e-16 90.1 101 45.5
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.2e-16 90.1 106 47.2
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.2e-16 90.1 101 46.5
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.2e-16 90.1 101 46.5
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.2e-16 90.1 101 46.5
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.2e-16 90.1 104 48.1
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-16 89.7 99 44.4
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 1.5e-16 89.7 102 45.1
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 1.5e-16 89.7 102 46.1
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.0e-16 89.4 104 46.2
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.0e-16 89.4 101 45.5
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 2.6e-16 89.0 102 47.1
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.4e-16 88.2 101 45.5
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 4.4e-16 88.2 102 45.1
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 5.7e-16 87.8 103 45.6
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 5.7e-16 87.8 100 45.0
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 7.5e-16 87.4 104 45.2
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 7.5e-16 87.4 102 45.1
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 7.5e-16 87.4 103 46.6
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 7.5e-16 87.4 103 45.6
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 9.7e-16 87.0 104 47.1
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 3.7e-15 85.1 103 45.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 6.3e-15 84.3 101 50.5
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 6.3e-15 84.3 101 50.5
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 8.2e-15 84.0 106 44.3
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.4e-14 82.4 99 45.5
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 3.1e-14 82.0 103 46.6
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 3.1e-14 82.0 99 44.4
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 4.1e-14 81.6 103 45.6
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 4.1e-14 81.6 103 45.6
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 4.1e-14 81.6 103 45.6
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 4.1e-14 81.6 103 45.6
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 4.1e-14 81.6 104 47.1
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 4.1e-14 81.6 104 46.2
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 5.3e-14 81.3 104 47.1
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 7.0e-14 80.9 102 38.2
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 1.2e-13 80.1 100 45.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.6e-13 79.7 103 48.5
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 2.7e-13 79.0 99 42.4
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 4.5e-13 78.2 92 45.7
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 4.5e-13 78.2 103 42.7
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 5.9e-13 77.8 88 48.9
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 1.7e-12 76.3 105 45.7
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 2.2e-12 75.9 104 42.3
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 2.2e-12 75.9 100 39.0
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 2.5e-11 72.4 105 43.8
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 2.5e-11 72.4 103 41.7
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 7.2e-11 70.9 105 46.7
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.6e-10 69.7 85 42.4
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 1.0e-09 67.0 103 38.8
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 3.0e-09 65.5 89 43.8
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 6.8e-09 64.3 102 39.2
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 2.6e-08 62.4 102 43.1
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 5.7e-08 61.2 124 35.5
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 2.8e-07 58.9 103 42.7
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 3.7e-07 58.5 54 51.9
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 4.8e-07 58.2 60 45.0
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.4e-06 56.6 68 48.5
TAR624G1426 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.8e-06 56.2 70 45.7
BcaB01g04756 Brassica carinata HOM05D007692 ORTHO05D009696 2.4e-06 55.8 40 60.0


User provided reference genes

Program Settings