Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 4.3e-116 421.4 222 100.0
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 6.3e-83 311.2 222 79.3
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 3.8e-56 222.2 157 72.6
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 8.6e-56 221.1 233 58.8
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 1.6e-54 216.9 207 61.8
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 3.6e-54 215.7 209 58.9
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.0e-53 214.2 187 64.7
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 8.9e-53 211.1 185 63.8
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 2.0e-52 209.9 201 59.7
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 2.6e-52 209.5 218 57.3
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 3.4e-52 209.1 214 57.0
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 7.5e-52 208.0 209 58.4
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 7.5e-52 208.0 153 71.9
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 2.9e-51 206.1 204 57.4
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 4.9e-51 205.3 148 70.3
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 4.9e-51 205.3 203 59.1
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 6.4e-51 204.9 154 70.8
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 6.4e-51 204.9 190 58.4
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 6.4e-51 204.9 158 69.0
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 8.3e-51 204.5 182 63.2
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 8.3e-51 204.5 158 67.7
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.4e-50 203.8 152 70.4
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 1.8e-50 203.4 170 65.9
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 4.1e-50 202.2 167 65.9
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 5.4e-50 201.8 212 57.5
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 5.4e-50 201.8 201 55.7
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 5.4e-50 201.8 192 60.9
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 5.4e-50 201.8 180 60.0
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.2e-49 200.7 209 56.9
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.2e-49 200.7 154 68.2
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.6e-49 200.3 173 65.3
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 2.7e-49 199.5 209 57.4
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 3.5e-49 199.1 175 64.0
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 4.6e-49 198.7 184 59.2
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 4.6e-49 198.7 172 63.4
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 5.9e-49 198.4 190 60.0
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 5.9e-49 198.4 216 56.9
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 7.8e-49 198.0 201 56.7
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 7.8e-49 198.0 173 60.1
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 1.7e-48 196.8 173 61.8
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 5.0e-48 195.3 218 54.1
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 5.0e-48 195.3 194 56.7
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 6.6e-48 194.9 162 65.4
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 1.5e-47 193.7 190 57.9
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 1.9e-47 193.4 200 56.0
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 2.5e-47 193.0 204 53.4
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 2.5e-47 193.0 197 56.3
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 3.3e-47 192.6 154 64.9
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 3.3e-47 192.6 154 64.9
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 4.3e-47 192.2 190 59.5
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 5.6e-47 191.8 229 52.8
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 7.3e-47 191.4 200 54.0
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.3e-47 191.4 200 54.0
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.3e-47 191.4 200 54.0
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 9.5e-47 191.0 196 57.1
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 1.2e-46 190.7 188 59.0
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 2.1e-46 189.9 216 53.2
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 2.8e-46 189.5 211 54.5
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 2.8e-46 189.5 187 58.3
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 3.6e-46 189.1 200 55.0
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 6.2e-46 188.3 202 54.0
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 6.2e-46 188.3 224 51.8
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 6.2e-46 188.3 188 56.4
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 8.0e-46 188.0 181 59.1
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 8.0e-46 188.0 183 59.6
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.0e-45 187.6 188 57.4
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.0e-45 187.6 187 57.2
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 5.2e-45 185.3 184 56.5
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 5.2e-45 185.3 179 59.2
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 6.8e-45 184.9 199 56.8
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 8.9e-45 184.5 173 57.8
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 4.4e-44 182.2 205 53.7
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 5.8e-44 181.8 177 58.8
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 7.5e-44 181.4 183 58.5
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 9.8e-44 181.0 200 53.0
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 9.8e-44 181.0 192 55.2
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 9.8e-44 181.0 150 65.3
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 9.8e-44 181.0 217 52.1
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 1.3e-43 180.6 248 48.0
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 2.2e-43 179.9 189 56.1
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 6.4e-43 178.3 181 57.5
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 8.3e-43 177.9 189 56.1
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 8.3e-43 177.9 170 57.1
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 2.4e-42 176.4 152 61.2
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 4.1e-42 175.6 182 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 1.0e-40 171.0 171 54.4
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.0e-40 171.0 146 64.4
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 5.6e-39 165.2 170 55.3
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 2.8e-38 162.9 154 59.7
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 4.7e-38 162.2 207 49.3
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 8.1e-38 161.4 149 55.7
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 5.8e-36 155.2 116 70.7
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 1.4e-34 150.6 115 67.0
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 1.3e-32 144.1 140 57.9
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 5.8e-28 128.6 89 73.0
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 2.9e-27 126.3 141 46.8
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 4.9e-27 125.6 161 50.9
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.1e-26 122.5 86 73.3
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 4.1e-26 122.5 86 73.3
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 5.1e-24 115.5 85 70.6
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 1.6e-17 94.0 144 43.8
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 8.7e-16 88.2 187 34.8
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 3.8e-11 72.8 62 66.1


User provided reference genes

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