Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 0.0e+00 2424.8 1258 100.0
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 5.9e-170 602.8 889 39.8
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 5.6e-168 596.3 1163 35.2
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 1.1e-147 528.9 1228 30.9
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 1.1e-144 518.8 985 32.5
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.8e-143 514.2 1198 30.6
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 4.7e-143 513.5 1176 33.1
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 4.7e-143 513.5 979 32.0
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 2.0e-141 508.1 1211 31.9
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 1.9e-139 501.5 1152 29.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 7.1e-139 499.6 1025 31.4
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 2.3e-137 494.6 1158 33.0
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 3.3e-136 490.7 1002 31.7
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 2.1e-135 488.0 1137 28.8
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 3.6e-135 487.3 1199 31.4
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 2.9e-132 477.6 977 30.8
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 9.3e-131 472.6 1236 31.9
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 9.6e-128 462.6 1150 27.9
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 1.6e-127 461.8 1036 28.7
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 5.8e-125 453.4 1165 31.1
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 3.8e-124 450.7 1147 28.2
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 3.8e-124 450.7 1192 30.8
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 8.4e-124 449.5 1014 28.4
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 8.4e-124 449.5 832 31.5
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 1.4e-123 448.7 1186 31.1
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 3.5e-122 444.1 1176 27.1
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.0e-122 443.4 1183 31.3
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 3.3e-120 437.6 1042 28.9
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 3.3e-120 437.6 706 33.9
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 7.4e-120 436.4 683 34.7
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 3.6e-119 434.1 1141 27.0
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 6.2e-119 433.3 720 33.2
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 8.1e-119 433.0 981 28.5
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 2.4e-118 431.4 1162 30.2
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.5e-117 428.7 1196 29.8
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 2.0e-117 428.3 1176 30.0
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 2.9e-116 424.5 683 34.0
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 2.4e-115 421.4 1027 27.9
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 7.1e-115 419.9 1181 29.4
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 7.1e-115 419.9 981 29.1
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 1.6e-114 418.7 1166 30.0
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 2.7e-114 417.9 983 28.3
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 1.1e-112 412.5 973 28.6
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 1.9e-112 411.8 801 31.8
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.6e-111 408.7 1058 27.8
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 6.2e-111 406.8 1195 29.0
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 1.4e-110 405.6 684 33.0
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 3.1e-110 404.4 700 32.6
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 3.1e-110 404.4 989 27.9
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 7.6e-109 399.8 909 29.9
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 1.7e-108 398.7 1150 26.5
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 2.9e-108 397.9 1164 29.3
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 1.1e-107 396.0 1150 26.4
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.1e-107 396.0 892 29.3
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 2.5e-107 394.8 1150 26.3
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 2.5e-107 394.8 1165 29.9
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 2.7e-106 391.3 1016 27.5
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 1.3e-105 389.0 698 32.4
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 2.3e-105 388.3 1016 26.1
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 5.1e-105 387.1 1146 26.3
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 5.7e-104 383.6 1182 25.8
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 1.6e-103 382.1 968 27.8
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 1.4e-102 379.0 1119 29.8
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 5.3e-102 377.1 1204 28.4
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 2.0e-101 375.2 736 30.7
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 1.0e-100 372.9 1013 26.7
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 1.3e-100 372.5 1082 29.2
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 2.9e-100 371.3 1021 26.6
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 1.1e-99 369.4 312 61.2
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 2.5e-99 368.2 1006 26.7
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.6e-98 365.5 726 32.0
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 1.8e-97 362.1 736 29.8
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 2.3e-97 361.7 1070 30.0
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 6.3e-95 353.6 1166 28.3
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 1.0e-92 346.3 1152 28.8
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 2.9e-92 344.7 1041 25.7
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.5e-91 341.7 726 29.8
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 1.8e-89 335.5 707 29.8
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 2.0e-88 332.0 1070 29.5
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 2.6e-88 331.6 716 29.9
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 9.7e-88 329.7 939 26.0
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 3.7e-87 327.8 631 30.9
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 6.9e-86 323.6 1131 28.8
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 1.3e-84 319.3 1199 27.6
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 1.7e-84 318.9 644 31.2
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 3.2e-83 314.7 958 25.3
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 1.8e-81 308.9 951 25.4
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 3.7e-71 274.6 608 29.1
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 3.1e-62 245.0 1127 25.6
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.5e-53 214.9 574 28.2
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 8.6e-44 183.7 315 31.1
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 8.6e-44 183.7 654 28.6
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 4.7e-42 177.9 346 30.3
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 1.2e-37 163.3 250 39.2
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 7.8e-37 160.6 240 40.0
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.3e-36 159.8 351 29.1
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 3.0e-36 158.7 365 41.9
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 4.7e-34 151.4 843 25.7
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.3e-28 133.3 256 32.8
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 5.1e-28 131.3 199 32.7
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 3.4e-24 118.6 403 23.1
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 2.7e-21 109.0 413 22.3
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 1.7e-20 106.3 205 31.7
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 2.4e-17 95.9 400 21.5
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 2.2e-15 89.4 218 30.3
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 6.4e-15 87.8 526 20.9
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 1.4e-14 86.7 181 31.5
MBI05_g36420_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.2e-14 85.1 87 41.4
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 7.8e-13 80.9 153 32.7
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 1.7e-12 79.7 153 32.7
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.9e-11 76.3 138 35.5
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.3e-10 73.6 108 36.1
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 2.6e-08 65.9 356 19.9
Gohir.A09G173100 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.6e-08 65.9 219 25.6
CiPaw.13G042800 Carya illinoinensis HOM05D005622 ORTHO05D002854 3.4e-08 65.5 165 26.1
QL03p001266 Quercus lobata HOM05D005622 ORTHO05D002854 3.4e-08 65.5 230 24.8
Gorai.006G190400 Gossypium raimondii HOM05D005622 ORTHO05D002854 7.6e-08 64.3 165 26.7
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 7.6e-08 64.3 176 26.1
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 9.9e-08 63.9 356 19.9
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 9.9e-08 63.9 356 19.9
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 1.3e-07 63.5 283 36.7
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.3e-07 63.5 116 28.4
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 1.7e-07 63.2 217 25.8
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.7e-07 63.2 116 28.4
ECA240G1416 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.2e-07 62.8 91 37.4
Gohir.D05G389201 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.2e-07 62.8 165 26.7
Gohir.D10G255600 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.2e-07 62.8 165 26.7
Aa31LG7G8600 Aethionema arabicum HOM05D005622 ORTHO05D002854 2.9e-07 62.4 219 24.7
Gohir.D03G178400 Gossypium hirsutum HOM05D005622 ORTHO05D002854 2.9e-07 62.4 165 26.7
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 2.9e-07 62.4 305 24.9
THA.LOC104808568 Tarenaya hassleriana HOM05D005622 ORTHO05D002854 2.9e-07 62.4 176 23.9
Gohir.D09G168800 Gossypium hirsutum HOM05D005622 ORTHO05D002854 3.8e-07 62.0 165 26.7
ECA234G1849 Erigeron canadensis HOM05D002785 ORTHO05D003042 4.9e-07 61.6 217 25.8
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 4.9e-07 61.6 314 23.2
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 6.4e-07 61.2 314 20.1
ECA240G1611 Erigeron canadensis HOM05D000162 ORTHO05D000090 6.4e-07 61.2 106 35.8
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 8.4e-07 60.8 202 24.3
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 8.4e-07 60.8 134 27.6
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 8.4e-07 60.8 155 23.9
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 8.4e-07 60.8 275 26.9
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 1.1e-06 60.5 133 27.1
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 1.1e-06 60.5 160 24.4
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 1.4e-06 60.1 315 21.6
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 1.4e-06 60.1 138 26.8
HPP92_012727 Vanilla planifolia HOM05D006569 ORTHO05D007515 1.4e-06 60.1 52 57.7
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 1.9e-06 59.7 226 22.6
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 1.9e-06 59.7 147 24.5
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 2.4e-06 59.3 155 24.5
MELO3C021816.2 Cucumis melo HOM05D002785 ORTHO05D003042 2.4e-06 59.3 207 23.2
arahy.Tifrunner.gnm1.ann1.3K1SXW Arachis hypogaea HOM05D000162 ORTHO05D000090 3.2e-06 58.9 166 25.3
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 3.2e-06 58.9 303 22.1
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 3.2e-06 58.9 120 30.0
MBI17_g35770_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 3.2e-06 58.9 175 25.1
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 3.2e-06 58.9 205 23.9
A05p41600 Brassica napus HOM05D001779 ORTHO05D001753 4.2e-06 58.5 115 31.3
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 4.2e-06 58.5 123 30.9
BraA05t22879Z Brassica rapa HOM05D001779 ORTHO05D001753 4.2e-06 58.5 115 31.3
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 4.2e-06 58.5 257 23.0
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 4.2e-06 58.5 230 21.3
Solyc02g069570.3 Solanum lycopersicum HOM05D002785 ORTHO05D003042 4.2e-06 58.5 207 23.7
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 4.2e-06 58.5 134 29.1
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.4e-06 58.2 353 20.4
EL10Ac4g10254 Beta vulgaris HOM05D005622 ORTHO05D002854 5.4e-06 58.2 165 24.2
EL10Ac4g10271 Beta vulgaris HOM05D005622 ORTHO05D002854 5.4e-06 58.2 165 24.2
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 5.4e-06 58.2 123 30.1
Haze_12341 Corylus avellana HOM05D005622 ORTHO05D002854 5.4e-06 58.2 160 25.0
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 5.4e-06 58.2 187 25.7
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 5.4e-06 58.2 132 28.0
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 5.4e-06 58.2 393 18.8
Zm00001eb303860 Zea mays HOM05D003514 ORTHO05D004280 5.4e-06 58.2 85 31.8
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 7.1e-06 57.8 304 22.4
Lalb_Chr21g0312681 Lupinus albus HOM05D002479 ORTHO05D002675 7.1e-06 57.8 197 23.9
THA.LOC104818854 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 7.1e-06 57.8 114 29.8
BcaC05g29817 Brassica carinata HOM05D001779 ORTHO05D001753 9.3e-06 57.4 115 30.4
C05p60810 Brassica napus HOM05D001779 ORTHO05D001753 9.3e-06 57.4 115 30.4
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 9.3e-06 57.4 123 30.9
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 9.3e-06 57.4 146 24.7
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 9.3e-06 57.4 123 27.6
Sopen02g018700 Solanum pennellii HOM05D002785 ORTHO05D003042 9.3e-06 57.4 207 23.7
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 9.3e-06 57.4 123 28.5


User provided reference genes

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