Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 1.6e-60 236.1 135 100.0
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 1.9e-45 186.0 138 84.8
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.6e-20 103.2 146 56.8
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.5e-10 70.1 139 41.0
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 1.3e-09 67.0 68 61.8
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 1.6e-09 66.6 88 54.5
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.8e-09 65.9 95 49.5
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 2.8e-09 65.9 140 41.4
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 6.2e-09 64.7 95 49.5
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 8.2e-09 64.3 102 48.0
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 8.2e-09 64.3 80 53.8
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.1e-08 63.9 153 39.2
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.8e-08 63.2 79 55.7
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 1.8e-08 63.2 105 45.7
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 1.8e-08 63.2 105 45.7
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 1.8e-08 63.2 105 45.7
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.4e-08 62.8 155 38.7
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 3.1e-08 62.4 64 59.4
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 3.1e-08 62.4 64 59.4
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 3.1e-08 62.4 63 61.9
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 3.1e-08 62.4 115 46.1
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 6.9e-08 61.2 147 36.1
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 6.9e-08 61.2 90 50.0
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 9.0e-08 60.8 74 55.4
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.0e-07 59.7 148 36.5
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.0e-07 59.7 67 61.2
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 2.6e-07 59.3 124 42.7
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 2.6e-07 59.3 59 62.7
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 2.6e-07 59.3 136 36.8
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.6e-07 59.3 70 57.1
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.4e-07 58.9 98 46.9
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.4e-07 58.9 98 46.9
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 4.5e-07 58.5 88 48.9
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 4.5e-07 58.5 98 45.9
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 4.5e-07 58.5 135 37.8
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 4.5e-07 58.5 63 58.7
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 5.8e-07 58.2 95 47.4
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 5.8e-07 58.2 59 62.7
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 5.8e-07 58.2 147 40.1
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.8e-07 58.2 64 59.4
Os12g0205633 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.0e-06 57.4 42 76.2
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 1.0e-06 57.4 59 62.7
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 1.0e-06 57.4 59 62.7
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 1.3e-06 57.0 59 62.7
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 1.3e-06 57.0 77 51.9
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.3e-06 57.0 95 46.3
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 1.3e-06 57.0 103 45.6
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.3e-06 57.0 151 34.4
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.3e-06 57.0 59 61.0
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.3e-06 57.0 59 61.0
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 1.7e-06 56.6 59 61.0
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 2.9e-06 55.8 95 45.3
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 3.8e-06 55.5 63 57.1
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 3.8e-06 55.5 59 61.0
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 3.8e-06 55.5 98 43.9
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 3.8e-06 55.5 142 33.8
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 4.9e-06 55.1 103 42.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 4.9e-06 55.1 60 60.0
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 4.9e-06 55.1 61 59.0
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.9e-06 55.1 63 57.1
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.9e-06 55.1 94 45.7
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 4.9e-06 55.1 143 37.8
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 4.9e-06 55.1 66 53.0
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 6.5e-06 54.7 95 44.2
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 8.4e-06 54.3 95 44.2
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 8.4e-06 54.3 118 40.7
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 8.4e-06 54.3 102 44.1


User provided reference genes

Program Settings