Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb003530 Zea mays HOM05D001612 ORTHO05D446614 6.7e-108 394.0 200 100.0
Zm00001eb157290 Zea mays HOM05D001612 ORTHO05D002104 1.3e-15 87.4 73 61.6
Zm00001eb289690 Zea mays HOM05D001612 ORTHO05D015015 5.2e-12 75.5 126 43.7
PGR044G0809 Punica granatum HOM05D001612 ORTHO05D002104 3.4e-11 72.8 118 42.4
Eucgr.D01356 Eucalyptus grandis HOM05D001612 ORTHO05D002104 3.8e-10 69.3 121 38.8
Eucgr.B03002 Eucalyptus grandis HOM05D001612 ORTHO05D002104 1.1e-09 67.8 121 38.8
Haze_00623 Corylus avellana HOM05D001612 ORTHO05D002104 2.4e-09 66.6 119 41.2
COL.COLO4_35761 Corchorus olitorius HOM05D001612 ORTHO05D002104 9.2e-09 64.7 130 36.9
HPP92_008878 Vanilla planifolia HOM05D001612 ORTHO05D002104 1.2e-08 64.3 116 37.1
Manes.06G066100 Manihot esculenta HOM05D001612 ORTHO05D002104 1.6e-08 63.9 120 39.2
Atru.chr9.2443 Acer truncatum HOM05D001612 ORTHO05D002104 2.7e-08 63.2 155 34.8
Nn1g09190 Nelumbo nucifera HOM05D001612 ORTHO05D002104 2.7e-08 63.2 174 31.0
QL01p040672 Quercus lobata HOM05D001612 ORTHO05D002104 2.7e-08 63.2 121 37.2
PGR102G1456 Punica granatum HOM05D001612 ORTHO05D002104 3.5e-08 62.8 123 35.8
MD16G1040200 Malus domestica HOM05D001612 ORTHO05D002104 7.8e-08 61.6 197 29.9
Phvul.009G091200 Phaseolus vulgaris HOM05D001612 ORTHO05D002104 1.0e-07 61.2 112 35.7
Actinidia14907 Actinidia chinensis HOM05D001612 ORTHO05D002104 1.3e-07 60.8 170 30.6
Gohir.D10G126500 Gossypium hirsutum HOM05D001612 ORTHO05D002104 1.3e-07 60.8 112 35.7
Gorai.011G139400 Gossypium raimondii HOM05D001612 ORTHO05D002104 1.3e-07 60.8 112 35.7
TAR622G0639 Trochodendron aralioides HOM05D001612 ORTHO05D002104 1.3e-07 60.8 121 38.0
Cfa015865 Carpinus fangiana HOM05D001612 ORTHO05D002104 1.7e-07 60.5 119 37.0
Dinv24976 Davidia involucrata HOM05D001612 ORTHO05D002104 1.7e-07 60.5 112 37.5
Gohir.A10G140300 Gossypium hirsutum HOM05D001612 ORTHO05D002104 3.0e-07 59.7 112 35.7
MD13G1039300 Malus domestica HOM05D001612 ORTHO05D002104 3.9e-07 59.3 176 33.0
CDE11G0910 Ceratophyllum demersum HOM05D001612 ORTHO05D002104 5.1e-07 58.9 112 35.7
Duzib151G1164 Durio zibethinus HOM05D001612 ORTHO05D002104 5.1e-07 58.9 112 34.8
Lj1g0010176 Lotus japonicus HOM05D001612 ORTHO05D002104 6.6e-07 58.5 113 33.6
Ciclev10008107m.g Citrus clementina HOM05D001612 ORTHO05D002104 8.7e-07 58.2 112 35.7
Actinidia16670 Actinidia chinensis HOM05D001612 ORTHO05D002104 1.1e-06 57.8 117 33.3
CDE09G1140 Ceratophyllum demersum HOM05D001612 ORTHO05D002104 1.1e-06 57.8 112 35.7
Glyma.06G066300 Glycine max HOM05D001612 ORTHO05D002104 1.1e-06 57.8 112 32.1
VMungo1309G1693 Vigna mungo HOM05D001612 ORTHO05D002104 1.1e-06 57.8 112 33.0
CANSAT11G1022 Cannabis sativa HOM05D001612 ORTHO05D002104 1.5e-06 57.4 112 33.9
Cpa.g.sc19.73 Carica papaya HOM05D001612 ORTHO05D002104 1.5e-06 57.4 112 34.8
CiPaw.05G239800 Carya illinoinensis HOM05D001612 ORTHO05D002104 1.5e-06 57.4 121 33.1
PSO017G7126 Papaver somniferum HOM05D001612 ORTHO05D002104 1.5e-06 57.4 172 32.6
PSO063G7008 Papaver somniferum HOM05D001612 ORTHO05D002104 1.5e-06 57.4 172 32.6
Lj8A723T60 Lonicera japonica HOM05D001612 ORTHO05D002104 1.9e-06 57.0 112 34.8
MBI07_g22170_MAGBIO Magnolia biondii HOM05D001612 ORTHO05D002104 1.9e-06 57.0 114 36.8
Os10g0463100 Oryza sativa ssp. japonica HOM05D001612 ORTHO05D002104 1.9e-06 57.0 84 39.3
Thecc.04G175000 Theobroma cacao HOM05D001612 ORTHO05D002104 1.9e-06 57.0 114 36.8
CiPaw.06G018400 Carya illinoinensis HOM05D001612 ORTHO05D002104 2.5e-06 56.6 121 35.5
TAR625G0844 Trochodendron aralioides HOM05D001612 ORTHO05D002104 2.5e-06 56.6 112 36.6
CDE01G0265 Ceratophyllum demersum HOM05D001612 ORTHO05D002104 3.3e-06 56.2 122 37.7
arahy.Tifrunner.gnm1.ann1.1EJ7KK Arachis hypogaea HOM05D001612 ORTHO05D002104 4.3e-06 55.8 112 33.9
arahy.Tifrunner.gnm1.ann1.27V6C1 Arachis hypogaea HOM05D001612 ORTHO05D002104 4.3e-06 55.8 112 33.9
arahy.Tifrunner.gnm1.ann1.TLT58G Arachis hypogaea HOM05D001612 ORTHO05D002104 4.3e-06 55.8 112 33.9
FAN20G0003 Fragaria x ananassa HOM05D001612 ORTHO05D002104 4.3e-06 55.8 112 33.0
Peaxi162Scf00753g00219 Petunia axillaris HOM05D001612 ORTHO05D002104 4.3e-06 55.8 118 37.3
DCAR_023645 Daucus carota HOM05D001612 ORTHO05D002104 5.6e-06 55.5 118 37.3
Glyma.04G065100 Glycine max HOM05D001612 ORTHO05D002104 5.6e-06 55.5 112 33.0
MBI19_g30056_MAGBIO Magnolia biondii HOM05D001612 ORTHO05D002104 5.6e-06 55.5 109 36.7
Manes.03G012700 Manihot esculenta HOM05D001612 ORTHO05D002104 5.6e-06 55.5 112 33.0
MSTRG.853 Avicennia marina HOM05D001612 ORTHO05D002104 9.6e-06 54.7 116 33.6
GSVIVG01015813001 Vitis vinifera HOM05D001612 ORTHO05D002104 9.6e-06 54.7 113 36.3


User provided reference genes

Program Settings