Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb003280 Zea mays HOM05D002083 ORTHO05D000332 2.3e-54 215.3 109 100.0
Zm00001eb251410 Zea mays HOM05D002083 ORTHO05D000332 4.1e-19 98.2 65 78.5
Zm00001eb187900 Zea mays HOM05D002083 ORTHO05D000332 2.7e-18 95.5 65 80.0
Os02g0697300 Oryza sativa ssp. japonica HOM05D002083 ORTHO05D000332 6.6e-17 90.9 65 73.8
Atru.chr12.2163 Acer truncatum HOM05D002083 ORTHO05D000332 3.0e-14 82.0 65 66.2
CiPaw.06G033200 Carya illinoinensis HOM05D002083 ORTHO05D000332 6.8e-14 80.9 65 64.6
Ciclev10020497m.g Citrus clementina HOM05D002083 ORTHO05D000332 2.0e-13 79.3 65 61.5
Haze_00411 Corylus avellana HOM05D002083 ORTHO05D000332 3.4e-13 78.6 65 61.5
CiPaw.05G219200 Carya illinoinensis HOM05D002083 ORTHO05D000332 4.4e-13 78.2 65 60.0
TWI12G0705 Tripterygium wilfordii HOM05D002083 ORTHO05D000332 5.8e-13 77.8 65 63.1
Cfa016038 Carpinus fangiana HOM05D002083 ORTHO05D000332 7.5e-13 77.4 65 61.5
QL09p023738 Quercus lobata HOM05D002083 ORTHO05D000332 7.5e-13 77.4 65 61.5
TWI36G1181 Tripterygium wilfordii HOM05D002083 ORTHO05D000332 9.8e-13 77.0 65 63.1
QL11p007847 Quercus lobata HOM05D002083 ORTHO05D000332 1.7e-12 76.3 65 60.0
Sed0005646 Sechium edule HOM05D002083 ORTHO05D000332 1.7e-12 76.3 65 60.0
Prupe.2G326800 Prunus persica HOM05D002083 ORTHO05D000332 2.2e-12 75.9 65 61.5
vmacro06514 Vaccinium macrocarpon HOM05D002083 ORTHO05D000332 2.2e-12 75.9 65 60.0
Manes.09G126600 Manihot esculenta HOM05D002083 ORTHO05D000332 2.9e-12 75.5 65 61.5
GSVIVG01014122001 Vitis vinifera HOM05D002083 ORTHO05D000332 2.9e-12 75.5 65 60.0
GSVIVG01024396001 Vitis vinifera HOM05D002083 ORTHO05D000332 3.7e-12 75.1 65 60.0
FAN10G0325 Fragaria x ananassa HOM05D002083 ORTHO05D000332 4.9e-12 74.7 65 60.0
Hma1.2p1_1680F.1_g297140 Hydrangea macrophylla HOM05D002083 ORTHO05D000332 4.9e-12 74.7 65 60.0
Thecc.05G214500 Theobroma cacao HOM05D002083 ORTHO05D000332 4.9e-12 74.7 71 59.2
Potri.013G082500 Populus trichocarpa HOM05D002083 ORTHO05D000332 6.4e-12 74.3 65 60.0
Sabra19G0062100 Salix brachista HOM05D002083 ORTHO05D000332 6.4e-12 74.3 65 60.0
Dinv29155 Davidia involucrata HOM05D002083 ORTHO05D000332 8.3e-12 73.9 65 60.0
Potri.019G050000 Populus trichocarpa HOM05D002083 ORTHO05D000332 8.3e-12 73.9 65 58.5
Duzib106G0477 Durio zibethinus HOM05D002083 ORTHO05D000332 1.1e-11 73.6 71 57.7
RcHm_v2.0_Chr1g0384291 Rosa chinensis HOM05D002083 ORTHO05D000332 1.1e-11 73.6 65 58.5
Lalb_Chr05g0211231 Lupinus albus HOM05D002083 ORTHO05D000332 1.4e-11 73.2 70 60.0
THA.LOC104827208 Tarenaya hassleriana HOM05D002083 ORTHO05D000332 1.4e-11 73.2 66 62.1
Duzib177G0189 Durio zibethinus HOM05D002083 ORTHO05D000332 1.9e-11 72.8 71 59.2
FvH4_7g34030 Fragaria vesca HOM05D002083 ORTHO05D000332 1.9e-11 72.8 65 56.9
Gohir.D08G241800 Gossypium hirsutum HOM05D002083 ORTHO05D000332 1.9e-11 72.8 71 59.2
Gorai.004G257100 Gossypium raimondii HOM05D002083 ORTHO05D000332 1.9e-11 72.8 71 59.2
Rhsim03G0221900 Rhododendron simsii HOM05D002083 ORTHO05D000332 1.9e-11 72.8 65 58.5
CSS0022277 Camellia sinensis var. sinensis HOM05D002083 ORTHO05D000332 2.4e-11 72.4 65 56.9
CDE02G1633 Ceratophyllum demersum HOM05D002083 ORTHO05D000332 2.4e-11 72.4 66 63.6
AUR62028181 Chenopodium quinoa HOM05D002083 ORTHO05D000332 2.4e-11 72.4 65 60.0
ClCG02G014460 Citrullus lanatus HOM05D002083 ORTHO05D000332 2.4e-11 72.4 65 60.0
Gohir.A08G221670 Gossypium hirsutum HOM05D002083 ORTHO05D000332 2.4e-11 72.4 71 57.7
Nn3g19384 Nelumbo nucifera HOM05D002083 ORTHO05D000332 2.4e-11 72.4 66 65.2
Sed0010211 Sechium edule HOM05D002083 ORTHO05D000332 2.4e-11 72.4 66 62.1
Actinidia34312 Actinidia chinensis HOM05D002083 ORTHO05D000332 3.2e-11 72.0 65 58.5
AUR62002068 Chenopodium quinoa HOM05D002083 ORTHO05D000332 3.2e-11 72.0 65 60.0
Sabra13G0072700 Salix brachista HOM05D002083 ORTHO05D000332 3.2e-11 72.0 65 56.9
THA.LOC104802925 Tarenaya hassleriana HOM05D002083 ORTHO05D000332 3.2e-11 72.0 66 60.6
Dinv17255 Davidia involucrata HOM05D002083 ORTHO05D000332 4.1e-11 71.6 65 58.5
Gohir.A13G156400 Gossypium hirsutum HOM05D002083 ORTHO05D000332 4.1e-11 71.6 71 57.7
Gohir.D13G161200 Gossypium hirsutum HOM05D002083 ORTHO05D000332 4.1e-11 71.6 71 57.7
Gorai.013G183000 Gossypium raimondii HOM05D002083 ORTHO05D000332 4.1e-11 71.6 71 57.7
Medtr5g007480 Medicago truncatula HOM05D002083 ORTHO05D000332 4.1e-11 71.6 67 56.7
Actinidia33795 Actinidia chinensis HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
Lj3C887G12 Lonicera japonica HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
Rhsim07G0247800 Rhododendron simsii HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
Rhsim07G0248200 Rhododendron simsii HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
TAR375G0710 Trochodendron aralioides HOM05D002083 ORTHO05D000332 5.4e-11 71.2 65 56.9
Oeu027886.1 Olea europaea HOM05D002083 ORTHO05D000332 7.0e-11 70.9 65 58.5
Ah.04g156680 Amaranthus hybridus HOM05D002083 ORTHO05D000332 9.2e-11 70.5 62 59.7
Ah.13g072720 Amaranthus hybridus HOM05D002083 ORTHO05D000332 9.2e-11 70.5 65 56.9
CDE11G0365 Ceratophyllum demersum HOM05D002083 ORTHO05D000332 9.2e-11 70.5 66 62.1
COL.COLO4_37806 Corchorus olitorius HOM05D002083 ORTHO05D000332 9.2e-11 70.5 71 57.7
Duzib128G1972 Durio zibethinus HOM05D002083 ORTHO05D000332 9.2e-11 70.5 69 58.0
Hma1.2p1_0649F.1_g195340 Hydrangea macrophylla HOM05D002083 ORTHO05D000332 9.2e-11 70.5 65 56.9
Psat2g188960 Pisum sativum HOM05D002083 ORTHO05D000332 9.2e-11 70.5 67 58.2
Aqoxy3G02172 Aquilegia oxysepala HOM05D002083 ORTHO05D000332 1.2e-10 70.1 65 56.9
arahy.Tifrunner.gnm1.ann1.KFNQ82 Arachis hypogaea HOM05D002083 ORTHO05D000332 1.2e-10 70.1 66 60.6
MD07G1309400 Malus domestica HOM05D002083 ORTHO05D000332 1.2e-10 70.1 65 55.4
Manes.08G065450 Manihot esculenta HOM05D002083 ORTHO05D000332 1.2e-10 70.1 65 58.5
arahy.Tifrunner.gnm1.ann1.IUPW61 Arachis hypogaea HOM05D002083 ORTHO05D000332 1.6e-10 69.7 66 60.6
EL10Ac3g05070 Beta vulgaris HOM05D002083 ORTHO05D000332 1.6e-10 69.7 111 45.9
MELO3C004132.2 Cucumis melo HOM05D002083 ORTHO05D000332 1.6e-10 69.7 65 58.5
Eucgr.A02971 Eucalyptus grandis HOM05D002083 ORTHO05D000332 1.6e-10 69.7 65 56.9
Actinidia08746 Actinidia chinensis HOM05D002083 ORTHO05D000332 2.0e-10 69.3 65 56.9
Aa31LG5G13520 Aethionema arabicum HOM05D002083 ORTHO05D000332 2.0e-10 69.3 69 58.0
AL3G12530 Arabidopsis lyrata HOM05D002083 ORTHO05D000332 2.0e-10 69.3 72 54.2
CsaV3_2G007540 Cucumis sativus L. HOM05D002083 ORTHO05D000332 2.0e-10 69.3 65 58.5
Thhalv10013718m.g Eutrema salsugineum HOM05D002083 ORTHO05D000332 2.0e-10 69.3 71 54.9
Lalb_Chr09g0320161 Lupinus albus HOM05D002083 ORTHO05D000332 2.0e-10 69.3 71 56.3
PGR042G3075 Punica granatum HOM05D002083 ORTHO05D000332 2.0e-10 69.3 66 59.1
Rhsim12G0207200 Rhododendron simsii HOM05D002083 ORTHO05D000332 2.0e-10 69.3 65 55.4
SGA_v2.0_scaffold18G08513 Striga asiatica HOM05D002083 ORTHO05D000332 2.0e-10 69.3 65 58.5
Phvul.002G040300 Phaseolus vulgaris HOM05D002083 ORTHO05D000332 2.7e-10 68.9 73 53.4
Aa31LG11G12700 Aethionema arabicum HOM05D002083 ORTHO05D000332 3.5e-10 68.6 75 54.7
Ca_24439_v3 Cicer arietinum L. HOM05D002083 ORTHO05D000332 3.5e-10 68.6 67 56.7
Thhalv10020862m.g Eutrema salsugineum HOM05D002083 ORTHO05D000332 3.5e-10 68.6 71 56.3
FAN01G0297 Fragaria x ananassa HOM05D002083 ORTHO05D000332 3.5e-10 68.6 65 55.4
Lalb_Chr16g0376571 Lupinus albus HOM05D002083 ORTHO05D000332 3.5e-10 68.6 67 61.2
Sp6g27220 Schrenkiella parvula HOM05D002083 ORTHO05D000332 3.5e-10 68.6 71 53.5
TAR629G1905 Trochodendron aralioides HOM05D002083 ORTHO05D000332 3.5e-10 68.6 65 56.9
Cpa.g.sc43.88 Carica papaya HOM05D002083 ORTHO05D000332 4.6e-10 68.2 66 57.6
Cc02_g00250 Coffea canephora HOM05D002083 ORTHO05D000332 4.6e-10 68.2 65 60.0
MD01G1236800 Malus domestica HOM05D002083 ORTHO05D000332 4.6e-10 68.2 65 55.4
HPP92_002570 Vanilla planifolia HOM05D002083 ORTHO05D000332 4.6e-10 68.2 65 53.8
VMungo1215G0829 Vigna mungo HOM05D002083 ORTHO05D000332 4.6e-10 68.2 73 54.8
AL6G27890 Arabidopsis lyrata HOM05D002083 ORTHO05D000332 6.0e-10 67.8 71 52.1
arahy.Tifrunner.gnm1.ann1.TCII1L Arachis hypogaea HOM05D002352 ORTHO05D000332 6.0e-10 67.8 63 61.9
Hund09795 Selenicereus undatus HOM05D002083 ORTHO05D000332 6.0e-10 67.8 65 56.9
Sc25g0001220 Simmondsia chinensis HOM05D002083 ORTHO05D000332 6.0e-10 67.8 65 58.5
AT5G16880 Arabidopsis thaliana HOM05D002083 ORTHO05D000332 7.8e-10 67.4 71 53.5
Carub.0006s1510 Capsella rubella HOM05D002083 ORTHO05D000332 7.8e-10 67.4 71 52.1
DCAR_020411 Daucus carota HOM05D002083 ORTHO05D000332 7.8e-10 67.4 65 56.9
LjContig00222g0003349 Lotus japonicus HOM05D002083 ORTHO05D000332 7.8e-10 67.4 69 56.5
MBI04_g32204_MAGBIO Magnolia biondii HOM05D002083 ORTHO05D000332 7.8e-10 67.4 66 57.6
ATR0829G007 Amborella trichopoda HOM05D002083 ORTHO05D000332 1.0e-09 67.0 74 56.8
arahy.Tifrunner.gnm1.ann1.3T4KA9 Arachis hypogaea HOM05D000664 ORTHO05D000332 1.0e-09 67.0 62 59.7
C09p60200 Brassica napus HOM05D002083 ORTHO05D000332 1.0e-09 67.0 71 54.9
BolC9t58853H Brassica oleracea HOM05D002083 ORTHO05D000332 1.0e-09 67.0 71 54.9
CARHR196280 Cardamine hirsuta HOM05D002083 ORTHO05D000332 1.0e-09 67.0 68 55.9
DCAR_009019 Daucus carota HOM05D002083 ORTHO05D000332 1.3e-09 66.6 65 55.4
TAR375G1052 Trochodendron aralioides HOM05D002083 ORTHO05D000332 1.3e-09 66.6 65 53.8
MSTRG.26927 Avicennia marina HOM05D002083 ORTHO05D000332 1.7e-09 66.2 65 56.9
CANSAT56G0837 Cannabis sativa HOM05D002083 ORTHO05D000332 1.7e-09 66.2 66 56.1
Carub.0003s0217 Capsella rubella HOM05D002083 ORTHO05D000332 1.7e-09 66.2 72 51.4
Nitab4.5_0001762g0060 Nicotiana tabacum HOM05D002083 ORTHO05D000332 1.7e-09 66.2 65 53.8
MSTRG.8573 Avicennia marina HOM05D002083 ORTHO05D000332 2.3e-09 65.9 65 53.8
Oeu031700.1 Olea europaea HOM05D002083 ORTHO05D000332 2.3e-09 65.9 65 53.8
SGA_v2.0_scaffold44G16897 Striga asiatica HOM05D002083 ORTHO05D000332 2.3e-09 65.9 65 55.4
arahy.Tifrunner.gnm1.ann1.X84LJS Arachis hypogaea HOM05D001897 ORTHO05D000332 3.0e-09 65.5 71 50.7
CAN.G1131.17 Capsicum annuum HOM05D002083 ORTHO05D000332 3.0e-09 65.5 65 53.8
Nitab4.5_0000021g0650 Nicotiana tabacum HOM05D002083 ORTHO05D000332 3.0e-09 65.5 65 53.8
THA.LOC104820888 Tarenaya hassleriana HOM05D002083 ORTHO05D000332 3.0e-09 65.5 66 56.1
BraA10t44294Z Brassica rapa HOM05D002083 ORTHO05D000332 3.9e-09 65.1 71 53.5
Migut.F00092 Erythranthe guttata HOM05D002083 ORTHO05D000332 3.9e-09 65.1 66 57.6
Sp3g02080 Schrenkiella parvula HOM05D002083 ORTHO05D000332 3.9e-09 65.1 67 58.2
arahy.Tifrunner.gnm1.ann1.M0G0AJ Arachis hypogaea HOM05D002083 ORTHO05D000332 5.0e-09 64.7 72 55.6
C03p09320 Brassica napus HOM05D002083 ORTHO05D000332 5.0e-09 64.7 71 49.3
BolC3t13427H Brassica oleracea HOM05D002083 ORTHO05D000332 5.0e-09 64.7 71 49.3
Gohir.A02G140800 Gossypium hirsutum HOM05D002083 ORTHO05D000332 5.0e-09 64.7 71 53.5
Gohir.D03G051200 Gossypium hirsutum HOM05D002083 ORTHO05D000332 5.0e-09 64.7 71 53.5
Gorai.003G052900 Gossypium raimondii HOM05D002083 ORTHO05D000332 5.0e-09 64.7 71 53.5
unitig_736.g22876 Utricularia gibba HOM05D002083 ORTHO05D000332 5.0e-09 64.7 65 58.5
A03p08060 Brassica napus HOM05D002083 ORTHO05D000332 6.6e-09 64.3 71 52.1
A10p22350 Brassica napus HOM05D002083 ORTHO05D000332 6.6e-09 64.3 71 52.1
BraA03t10131Z Brassica rapa HOM05D002083 ORTHO05D000332 6.6e-09 64.3 71 52.1
arahy.Tifrunner.gnm1.ann1.1M2LFP Arachis hypogaea HOM05D002083 ORTHO05D000332 8.6e-09 63.9 67 58.2
arahy.Tifrunner.gnm1.ann1.BH0PU9 Arachis hypogaea HOM05D002083 ORTHO05D000332 8.6e-09 63.9 63 60.3
Solyc03g097070.3 Solanum lycopersicum HOM05D002083 ORTHO05D000332 8.6e-09 63.9 65 53.8
Sopen03g027810 Solanum pennellii HOM05D002083 ORTHO05D000332 8.6e-09 63.9 65 53.8
Eucgr.K00082 Eucalyptus grandis HOM05D002083 ORTHO05D000332 1.1e-08 63.5 65 50.8
Lsat_1_v5_gn_9_47621 Lactuca sativa HOM05D002083 ORTHO05D000332 1.1e-08 63.5 67 52.2
Peaxi162Scf00516g00648 Petunia axillaris HOM05D002083 ORTHO05D000332 1.5e-08 63.2 65 52.3
SalBow4G0769 Salvia bowleyana HOM05D002083 ORTHO05D000332 1.5e-08 63.2 65 56.9
SalBow4G1469 Salvia bowleyana HOM05D002083 ORTHO05D000332 1.5e-08 63.2 65 56.9
unitig_52.g16853 Utricularia gibba HOM05D002636 ORTHO05D000332 1.5e-08 63.2 69 53.6
arahy.Tifrunner.gnm1.ann1.W6J6JM Arachis hypogaea HOM05D002083 ORTHO05D000332 1.9e-08 62.8 65 53.8
Lj3g0026692 Lotus japonicus HOM05D002083 ORTHO05D000332 1.9e-08 62.8 68 55.9
ECA232G1729 Erigeron canadensis HOM05D002083 ORTHO05D006801 2.5e-08 62.4 67 52.2
arahy.Tifrunner.gnm1.ann1.309ZMG Arachis hypogaea HOM05D002083 ORTHO05D000332 3.3e-08 62.0 72 51.4
HanXRQChr05g0149521 Helianthus annuus HOM05D002083 ORTHO05D000332 4.3e-08 61.6 68 52.9
arahy.Tifrunner.gnm1.ann1.DIR85G Arachis hypogaea HOM05D001897 ORTHO05D000332 5.6e-08 61.2 71 47.9
arahy.Tifrunner.gnm1.ann1.MDC40M Arachis hypogaea HOM05D001897 ORTHO05D000332 5.6e-08 61.2 71 47.9
DCAR_010540 Daucus carota HOM05D002083 ORTHO05D000332 7.3e-08 60.8 74 50.0
Glyma.01G232600 Glycine max HOM05D002083 ORTHO05D000332 9.5e-08 60.5 76 52.6
VMungo1127G1449 Vigna mungo HOM05D002083 ORTHO05D000332 9.5e-08 60.5 102 42.2
Glyma.11G108102 Glycine max HOM05D002083 ORTHO05D000332 1.2e-07 60.1 65 50.8
arahy.Tifrunner.gnm1.ann1.FQ4QBY Arachis hypogaea HOM05D002083 ORTHO05D000332 1.6e-07 59.7 63 57.1
PSO782G4120 Papaver somniferum HOM05D002083 ORTHO05D000332 2.8e-07 58.9 65 53.8
CARHR077040 Cardamine hirsuta HOM05D002083 ORTHO05D000332 4.7e-07 58.2 79 53.2
Rhsim09G0213100 Rhododendron simsii HOM05D002083 ORTHO05D000332 6.2e-07 57.8 64 51.6
arahy.Tifrunner.gnm1.ann1.R4FJIU Arachis hypogaea HOM05D002083 ORTHO05D000332 1.1e-06 57.0 69 49.3
arahy.Tifrunner.gnm1.ann1.444T0H Arachis hypogaea HOM05D002083 ORTHO05D000332 1.4e-06 56.6 63 55.6
arahy.Tifrunner.gnm1.ann1.79KFG9 Arachis hypogaea HOM05D002083 ORTHO05D000332 3.1e-06 55.5 66 50.0
HanXRQChr03g0088481 Helianthus annuus HOM05D002083 ORTHO05D000332 3.1e-06 55.5 66 53.0
Pp3c1_21160 Physcomitrium patens HOM05D000744 ORTHO05D000332 3.1e-06 55.5 71 47.9
SMO119G0266 Selaginella moellendorffii HOM05D002083 ORTHO05D000332 5.2e-06 54.7 69 50.7


User provided reference genes

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