Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.8e-92 341.3 189 100.0
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.8e-92 341.3 189 100.0
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 4.5e-90 334.7 189 97.9
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 6.0e-58 228.0 189 67.7
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 2.5e-24 116.3 198 48.0
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.6e-24 115.2 195 45.1
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.2e-23 111.7 142 50.7
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 6.2e-23 111.7 144 50.0
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.1e-23 111.3 193 43.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.4e-22 110.5 127 52.8
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.4e-22 109.8 124 53.2
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.4e-22 109.8 190 47.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.4e-22 109.8 191 45.5
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 9.0e-22 107.8 196 46.4
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 125 48.0
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 3.4e-21 105.9 143 46.9
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 4.5e-21 105.5 125 49.6
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 4.5e-21 105.5 180 43.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 5.8e-21 105.1 125 48.8
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 5.8e-21 105.1 196 47.4
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 7.6e-21 104.8 196 42.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 9.9e-21 104.4 207 43.5
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 9.9e-21 104.4 139 47.5
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 1.3e-20 104.0 128 47.7
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 2.2e-20 103.2 189 42.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.9e-20 102.8 128 48.4
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.8e-20 102.4 192 41.7
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 4.9e-20 102.1 143 46.2
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 6.4e-20 101.7 205 44.9
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 6.4e-20 101.7 195 43.6
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 8.4e-20 101.3 198 41.4
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.9e-19 100.1 150 45.3
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.5e-19 99.8 139 45.3
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.5e-19 99.8 199 43.2
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.5e-19 99.8 141 47.5
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.5e-19 99.8 141 46.1
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.5e-19 99.8 145 52.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 2.5e-19 99.8 144 46.5
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.2e-19 99.4 199 41.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.2e-19 99.4 129 48.8
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.2e-19 99.4 199 43.2
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 3.2e-19 99.4 183 39.9
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.2e-19 99.0 141 44.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.5e-19 98.6 192 39.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 5.5e-19 98.6 194 44.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.5e-19 98.6 136 45.6
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 7.1e-19 98.2 127 46.5
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 7.1e-19 98.2 139 45.3
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 7.1e-19 98.2 135 45.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 9.3e-19 97.8 141 43.3
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 9.3e-19 97.8 188 38.3
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 9.3e-19 97.8 130 49.2
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.2e-18 97.4 141 43.3
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.2e-18 97.4 203 39.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.6e-18 97.1 142 45.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.6e-18 97.1 141 44.0
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.6e-18 97.1 188 43.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.1e-18 96.7 127 46.5
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 2.1e-18 96.7 129 45.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 2.7e-18 96.3 93 54.8
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.5e-18 95.9 192 41.1
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 3.5e-18 95.9 146 43.8
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 6.0e-18 95.1 126 47.6
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 6.0e-18 95.1 195 39.5
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 6.0e-18 95.1 135 46.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 6.0e-18 95.1 76 65.8
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 7.9e-18 94.7 140 45.7
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 7.9e-18 94.7 142 45.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.3e-17 94.0 208 41.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.3e-17 94.0 125 45.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.3e-17 94.0 125 45.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.3e-17 94.0 138 44.2
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.3e-17 94.0 188 42.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.8e-17 93.6 199 37.7
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 1.8e-17 93.6 125 44.8
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 2.3e-17 93.2 147 44.9
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.3e-17 93.2 127 46.5
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 3.0e-17 92.8 119 47.1
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.9e-17 92.4 194 44.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 3.9e-17 92.4 129 44.2
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.1e-17 92.0 135 45.9
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 5.1e-17 92.0 194 42.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 8.7e-17 91.3 184 41.8
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 8.7e-17 91.3 125 44.0
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.1e-16 90.9 96 52.1
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.1e-16 90.9 96 52.1
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.1e-16 90.9 143 44.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.1e-16 90.9 130 43.8
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.5e-16 90.5 192 44.3
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.5e-16 90.5 201 40.8
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.5e-16 90.5 77 61.0
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.9e-16 90.1 93 53.8
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.9e-16 90.1 148 44.6
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.9e-16 90.1 119 49.6
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.3e-16 89.4 136 44.9
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 4.3e-16 89.0 91 54.9
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 4.3e-16 89.0 92 54.3
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 5.6e-16 88.6 93 52.7
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 9.6e-16 87.8 93 52.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 9.6e-16 87.8 163 40.5
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 9.6e-16 87.8 211 37.4
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.3e-15 87.4 136 45.6
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-15 87.4 136 45.6
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.3e-15 87.4 136 45.6
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.1e-15 86.7 91 51.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.1e-15 86.7 146 41.8
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.8e-15 86.3 202 39.6
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.8e-15 86.3 207 35.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 3.7e-15 85.9 149 39.6
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.8e-15 85.5 200 41.0
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 4.8e-15 85.5 130 40.8
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 6.2e-15 85.1 76 56.6
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 6.2e-15 85.1 210 42.9
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 6.2e-15 85.1 210 41.9
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 8.2e-15 84.7 144 43.1
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 8.2e-15 84.7 76 56.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 8.2e-15 84.7 152 44.1
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.1e-14 84.3 76 59.2
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.1e-14 84.3 76 59.2
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.8e-14 83.6 133 41.4
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.4e-14 83.2 91 53.8
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 3.1e-14 82.8 92 50.0
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 3.1e-14 82.8 92 50.0
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.0e-14 82.4 76 53.9
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.0e-14 82.4 76 53.9
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 4.0e-14 82.4 90 53.3
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 5.3e-14 82.0 76 55.3
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-14 81.6 126 42.9
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 6.9e-14 81.6 116 45.7
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.2e-13 80.9 141 39.7
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 5.8e-13 78.6 186 37.6
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 7.6e-13 78.2 142 38.7
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.3e-12 77.4 71 57.7
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 8.4e-12 74.7 71 54.9
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 1.6e-10 70.5 122 38.5
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.1e-10 68.6 61 59.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 3.9e-09 65.9 54 68.5
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.1e-08 64.3 55 65.5
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 3.3e-08 62.8 127 34.6
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.3e-08 62.8 192 34.4
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 4.3e-08 62.4 188 31.9
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 7.4e-08 61.6 104 39.4
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.3e-07 60.8 62 58.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-07 60.8 39 71.8
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-07 60.5 42 69.0
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.6e-07 60.5 73 50.7
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.8e-07 59.7 153 36.6
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 2.4e-06 56.6 120 35.0
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 2.4e-06 56.6 139 31.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.9e-06 55.1 110 41.8


User provided reference genes

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