Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb002600 Zea mays HOM05D016000 ORTHO05D006528 3.5e-180 635.2 411 100.0
Os10g0542700 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 3.1e-67 260.0 359 56.0
Zm00001eb250150 Zea mays HOM05D016000 ORTHO05D020936 1.3e-25 121.7 375 33.9
HPP92_003498 Vanilla planifolia HOM05D000192 ORTHO05D006528 9.7e-21 105.5 349 31.2
TAR628G1559 Trochodendron aralioides HOM05D000192 ORTHO05D006528 1.7e-20 104.8 355 28.7
HPP92_026895 Vanilla planifolia HOM05D000192 ORTHO05D006528 1.7e-20 104.8 355 34.9
Nn5g30919 Nelumbo nucifera HOM05D000192 ORTHO05D006528 1.8e-19 101.3 356 28.4
Os06g0725500 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 7.0e-19 99.4 325 30.2
Os06g0725700 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 7.7e-18 95.9 331 34.7
MBI08_g42655_MAGBIO Magnolia biondii HOM05D000192 ORTHO05D006528 1.5e-16 91.7 352 27.0
Cpa.g.sc26.210 Carica papaya HOM05D000192 ORTHO05D006528 3.2e-16 90.5 330 26.7
Haze_22755 Corylus avellana HOM05D000192 ORTHO05D006528 3.2e-16 90.5 352 27.0
TAR376G0017 Trochodendron aralioides HOM05D000192 ORTHO05D006528 2.1e-15 87.8 352 27.3
Os06g0725800 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 3.6e-15 87.0 351 28.5
COL.COLO4_03996 Corchorus olitorius HOM05D000192 ORTHO05D006528 6.1e-15 86.3 324 26.2
CiPaw.07G139700 Carya illinoinensis HOM05D000192 ORTHO05D006528 8.0e-15 85.9 351 25.4
Duzib093G0457 Durio zibethinus HOM05D000192 ORTHO05D006528 1.0e-14 85.5 323 25.1
Gohir.A05G180100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.0e-14 85.5 352 25.0
vmacro04400 Vaccinium macrocarpon HOM05D000192 ORTHO05D006528 1.0e-14 85.5 351 26.8
Duzib041G0263 Durio zibethinus HOM05D000192 ORTHO05D006528 1.4e-14 85.1 322 25.8
CAN.G311.110 Capsicum annuum HOM05D000192 ORTHO05D006528 1.8e-14 84.7 351 27.1
Rhsim07G0254500 Rhododendron simsii HOM05D000192 ORTHO05D006528 6.7e-14 82.8 335 26.9
Gohir.D01G093300 Gossypium hirsutum HOM05D000192 ORTHO05D006528 8.8e-14 82.4 351 25.4
Gohir.D05G183100 Gossypium hirsutum HOM05D000192 ORTHO05D006528 1.1e-13 82.0 334 24.9
Gorai.002G118700 Gossypium raimondii HOM05D000192 ORTHO05D006528 1.1e-13 82.0 352 25.9
Nn6g31750 Nelumbo nucifera HOM05D000192 ORTHO05D006528 1.5e-13 81.6 355 27.3
Ciclev10003381m.g Citrus clementina HOM05D000192 ORTHO05D006528 2.0e-13 81.3 325 24.9
Rhsim07G0254400 Rhododendron simsii HOM05D000192 ORTHO05D006528 2.0e-13 81.3 341 26.7
Potri.005G249500 Populus trichocarpa HOM05D000192 ORTHO05D006528 3.3e-13 80.5 328 24.1
Sopen04g035890 Solanum pennellii HOM05D000192 ORTHO05D006528 3.3e-13 80.5 353 26.3
Thecc.08G057400 Theobroma cacao HOM05D000192 ORTHO05D006528 3.3e-13 80.5 323 25.4
Manes.05G135200 Manihot esculenta HOM05D000192 ORTHO05D006528 7.5e-13 79.3 332 25.0
Manes.18G006100 Manihot esculenta HOM05D000192 ORTHO05D006528 7.5e-13 79.3 322 24.2
Atru.chr13.154 Acer truncatum HOM05D000192 ORTHO05D006528 1.3e-12 78.6 323 24.1
Cc10_g00760 Coffea canephora HOM05D000192 ORTHO05D006528 1.3e-12 78.6 358 27.9
CsaV3_4G037150 Cucumis sativus L. HOM05D000192 ORTHO05D006528 2.2e-12 77.8 344 25.0
Solyc04g082270.3 Solanum lycopersicum HOM05D000192 ORTHO05D006528 2.2e-12 77.8 353 26.1
QL02p013914 Quercus lobata HOM05D000192 ORTHO05D006528 2.8e-12 77.4 306 25.5
Rhsim07G0254600 Rhododendron simsii HOM05D000192 ORTHO05D006528 3.7e-12 77.0 353 24.4
Dinv31930 Davidia involucrata HOM05D000192 ORTHO05D006528 4.8e-12 76.6 191 28.8
Gohir.A01G106900 Gossypium hirsutum HOM05D000192 ORTHO05D006528 4.8e-12 76.6 353 24.9
ClCG11G018620 Citrullus lanatus HOM05D000192 ORTHO05D006528 1.1e-11 75.5 341 26.7
Zm00001eb228490 Zea mays HOM05D000192 ORTHO05D006528 1.1e-11 75.5 326 36.2
Sabra05G0193000 Salix brachista HOM05D000192 ORTHO05D006528 1.4e-11 75.1 328 23.8
PGSC0003DMG400009973 Solanum tuberosum HOM05D000192 ORTHO05D006528 1.4e-11 75.1 353 25.8
THA.LOC104813758 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 1.4e-11 75.1 362 26.5
Zm00001eb043790 Zea mays HOM05D000192 ORTHO05D006528 1.4e-11 75.1 323 29.4
MELO3C017013.2 Cucumis melo HOM05D000192 ORTHO05D006528 1.8e-11 74.7 344 25.6
TWI56G1025 Tripterygium wilfordii HOM05D000192 ORTHO05D006528 1.8e-11 74.7 321 25.9
Os10g0510200 Oryza sativa ssp. japonica HOM05D000192 ORTHO05D006528 2.4e-11 74.3 327 29.4
Potri.002G011600 Populus trichocarpa HOM05D000192 ORTHO05D006528 2.4e-11 74.3 333 25.2
Prupe.1G355300 Prunus persica HOM05D000192 ORTHO05D006528 3.1e-11 73.9 363 25.9
arahy.Tifrunner.gnm1.ann1.D59EVQ Arachis hypogaea HOM05D000192 ORTHO05D006528 4.1e-11 73.6 347 23.6
BcaC08g47122 Brassica carinata HOM05D000192 ORTHO05D006528 4.1e-11 73.6 357 24.6
DCAR_009526 Daucus carota HOM05D000192 ORTHO05D006528 9.1e-11 72.4 322 24.2
Sabra02G0009200 Salix brachista HOM05D000192 ORTHO05D006528 1.2e-10 72.0 317 24.0
VMungo1309G1647 Vigna mungo HOM05D000192 ORTHO05D006528 1.2e-10 72.0 332 23.5
Eucgr.F01753 Eucalyptus grandis HOM05D000192 ORTHO05D006528 3.5e-10 70.5 162 29.6
BcaC08g47275 Brassica carinata HOM05D000192 ORTHO05D006528 4.5e-10 70.1 359 24.0
C06p50200 Brassica napus HOM05D000192 ORTHO05D006528 4.5e-10 70.1 359 24.0
BolC6t40060H Brassica oleracea HOM05D000192 ORTHO05D006528 4.5e-10 70.1 359 24.0
Nitab4.5_0002710g0070 Nicotiana tabacum HOM05D000192 ORTHO05D006528 5.9e-10 69.7 354 25.7
Zm00001eb074020 Zea mays HOM05D016000 ORTHO05D006528 5.9e-10 69.7 153 35.3
Sed0005663 Sechium edule HOM05D000192 ORTHO05D006528 7.7e-10 69.3 352 23.0
PGR083G2156 Punica granatum HOM05D000192 ORTHO05D006528 1.0e-09 68.9 333 24.0
Gorai.009G188400 Gossypium raimondii HOM05D000192 ORTHO05D006528 1.3e-09 68.6 186 30.1
Nitab4.5_0000337g0210 Nicotiana tabacum HOM05D000192 ORTHO05D006528 1.7e-09 68.2 324 25.3
Peaxi162Scf00400g00022 Petunia axillaris HOM05D000192 ORTHO05D006528 2.2e-09 67.8 364 25.5
BraA07t31711Z Brassica rapa HOM05D000192 ORTHO05D006528 2.9e-09 67.4 359 23.7
Os04g0562500 Oryza sativa ssp. japonica HOM05D016000 ORTHO05D020936 2.9e-09 67.4 118 36.4
Zm00001eb438080 Zea mays HOM05D016000 ORTHO05D020936 2.9e-09 67.4 106 41.5
Phvul.009G021700 Phaseolus vulgaris HOM05D000192 ORTHO05D006528 3.8e-09 67.0 335 23.0
A07p41810 Brassica napus HOM05D000192 ORTHO05D006528 5.0e-09 66.6 359 23.7
Sp5g31380 Schrenkiella parvula HOM05D000192 ORTHO05D006528 5.0e-09 66.6 362 24.9
Sed0010871 Sechium edule HOM05D000192 ORTHO05D006528 6.5e-09 66.2 324 25.6
Sabra02G0009100 Salix brachista HOM05D000192 ORTHO05D006528 8.5e-09 65.9 323 23.5
SalBow7G2283 Salvia bowleyana HOM05D000192 ORTHO05D006528 8.5e-09 65.9 216 28.7
Zm00001eb393860 Zea mays HOM05D000192 ORTHO05D006528 8.5e-09 65.9 44 77.3
Ah.11g041040 Amaranthus hybridus HOM05D000192 ORTHO05D006528 1.5e-08 65.1 345 24.6
Cfa014060 Carpinus fangiana HOM05D000192 ORTHO05D006528 1.5e-08 65.1 306 24.5
Thhalv10019441m.g Eutrema salsugineum HOM05D000192 ORTHO05D006528 1.9e-08 64.7 362 24.0
Oeu004529.1 Olea europaea HOM05D000192 ORTHO05D006528 1.9e-08 64.7 365 24.9
ATR0661G095 Amborella trichopoda HOM05D000192 ORTHO05D006528 2.5e-08 64.3 352 26.7
Glyma.04G018800 Glycine max HOM05D000192 ORTHO05D006528 2.5e-08 64.3 341 22.3
Aa31LG4G6330 Aethionema arabicum HOM05D000192 ORTHO05D006528 3.2e-08 63.9 365 24.1
PSO541G6369 Papaver somniferum HOM05D000192 ORTHO05D006528 3.2e-08 63.9 329 24.6
THA.LOC104807040 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 3.2e-08 63.9 332 28.3
Aqoxy6G01755 Aquilegia oxysepala HOM05D000192 ORTHO05D006528 5.5e-08 63.2 351 20.8
CANSAT25G1315 Cannabis sativa HOM05D000192 ORTHO05D006528 5.5e-08 63.2 338 24.6
PSO170G2613 Papaver somniferum HOM05D000192 ORTHO05D006528 5.5e-08 63.2 325 21.8
THA.LOC104809754 Tarenaya hassleriana HOM05D000192 ORTHO05D006528 5.5e-08 63.2 335 23.6
TPR.G38156 Trifolium pratense HOM05D000192 ORTHO05D006528 7.2e-08 62.8 342 22.2
BcaB05g24976 Brassica carinata HOM05D000192 ORTHO05D006528 9.4e-08 62.4 362 24.3
FAN15G0671 Fragaria x ananassa HOM05D000192 ORTHO05D006528 9.4e-08 62.4 358 25.4
PSO675G4094 Papaver somniferum HOM05D000192 ORTHO05D006528 2.1e-07 61.2 329 24.3
Lsat_1_v5_gn_9_44960 Lactuca sativa HOM05D000192 ORTHO05D006528 2.7e-07 60.8 357 23.2
AT1G76240 Arabidopsis thaliana HOM05D000192 ORTHO05D006528 4.7e-07 60.1 331 23.9
EL10Ac1g01984 Beta vulgaris HOM05D000192 ORTHO05D006528 4.7e-07 60.1 368 24.2
Glyma.06G019100 Glycine max HOM05D000192 ORTHO05D006528 6.1e-07 59.7 332 21.7
Sed0016603 Sechium edule HOM05D000192 ORTHO05D006528 8.0e-07 59.3 323 27.9
AL2G36320 Arabidopsis lyrata HOM05D000192 ORTHO05D006528 1.0e-06 58.9 329 23.4
RcHm_v2.0_Chr6g0304151 Rosa chinensis HOM05D000192 ORTHO05D006528 2.3e-06 57.8 357 24.9
FAN27G2646 Fragaria x ananassa HOM05D000192 ORTHO05D006528 3.0e-06 57.4 358 24.9
Medtr3g115150 Medicago truncatula HOM05D000192 ORTHO05D006528 3.0e-06 57.4 334 22.8
Os02g0669500 Oryza sativa ssp. japonica HOM05D016000 ORTHO05D020936 3.0e-06 57.4 104 38.5
SGA_v2.0_scaffold108G30845 Striga asiatica HOM05D000192 ORTHO05D006528 3.0e-06 57.4 358 26.5
Carub.0002s2313 Capsella rubella HOM05D000192 ORTHO05D006528 5.2e-06 56.6 329 23.4
ECA232G4383 Erigeron canadensis HOM05D000192 ORTHO05D006528 6.8e-06 56.2 358 23.5


User provided reference genes

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