Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 0.0e+00 1789.2 920 100.0
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 0.0e+00 1105.1 951 66.8
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.5e-114 418.3 941 35.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 7.1e-104 382.9 942 33.1
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.4e-99 368.6 990 33.4
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 2.2e-97 361.3 931 33.2
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 7.1e-96 356.3 962 32.7
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.3e-94 352.1 934 32.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.3e-94 351.3 938 33.3
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 6.6e-94 349.7 944 33.8
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 6.6e-94 349.7 915 32.8
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.5e-93 348.6 942 32.7
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.9e-93 348.2 973 32.7
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.1e-92 344.7 926 32.2
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 3.6e-92 344.0 943 33.2
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 8.1e-92 342.8 929 32.6
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.8e-91 341.7 929 32.5
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 4.0e-91 340.5 949 33.5
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.2e-90 339.0 929 32.4
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.5e-90 338.6 926 32.5
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 3.4e-90 337.4 915 32.8
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.4e-90 337.4 931 32.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 5.8e-90 336.7 941 31.7
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 3.8e-89 334.0 949 32.7
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 8.4e-89 332.8 940 31.6
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.1e-88 332.4 949 31.8
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 1.4e-88 332.0 925 32.2
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 1.9e-88 331.6 941 31.6
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.9e-88 331.6 917 32.5
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 2.4e-88 331.3 943 32.1
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 5.4e-88 330.1 952 31.9
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.7e-87 327.8 942 30.8
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 2.7e-87 327.8 949 31.8
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.3e-86 325.5 949 31.3
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 8.7e-86 322.8 937 30.6
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 8.7e-86 322.8 860 32.4
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.1e-85 322.4 938 31.2
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 7.3e-85 319.7 946 31.7
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.3e-84 318.9 914 31.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 2.4e-83 314.7 941 30.9
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 4.0e-83 313.9 941 32.4
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.9e-83 313.2 941 32.4
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 6.9e-83 313.2 920 32.0
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 1.2e-82 312.4 940 30.7
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.2e-82 312.4 949 31.9
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.6e-82 311.2 940 32.4
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 3.4e-82 310.8 901 31.6
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.2e-81 308.1 928 30.0
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 2.9e-81 307.8 942 31.0
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.9e-81 307.8 931 30.2
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.4e-81 306.6 937 30.5
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 6.4e-81 306.6 933 30.3
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 6.4e-81 306.6 934 32.0
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 8.4e-81 306.2 943 31.2
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.4e-80 305.4 999 30.3
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 2.4e-80 304.7 932 31.3
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 3.2e-80 304.3 942 31.0
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 7.1e-80 303.1 951 30.9
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.2e-79 302.4 871 33.1
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 2.1e-79 301.6 930 31.7
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 4.6e-79 300.4 960 31.8
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 4.6e-79 300.4 960 31.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.6e-78 296.6 917 29.9
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 3.3e-77 294.3 920 31.1
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.4e-77 293.1 922 30.3
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.3e-76 292.4 932 30.0
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.1e-76 291.6 934 30.9
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.1e-76 291.6 885 32.0
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 2.8e-76 291.2 938 30.3
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.4e-75 288.9 931 31.1
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 5.3e-75 287.0 942 30.4
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 2.9e-73 281.2 936 31.2
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 8.4e-73 279.6 795 31.2
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 8.4e-73 279.6 929 29.1
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.1e-72 279.3 875 31.5
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 9.3e-72 276.2 936 30.0
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.2e-71 275.8 873 32.3
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 3.5e-71 274.2 931 30.3
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 4.6e-71 273.9 925 30.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 1.0e-70 272.7 878 30.5
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 9.6e-69 266.2 939 30.0
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-66 259.2 919 29.2
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 5.8e-66 256.9 911 30.0
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 2.2e-65 255.0 898 29.3
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 6.5e-65 253.4 962 28.8
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.4e-64 252.3 856 29.2
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.4e-64 252.3 935 29.0
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 3.2e-64 251.1 948 29.2
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 4.2e-64 250.8 846 29.8
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.1e-64 250.0 930 29.6
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 7.1e-64 250.0 928 29.2
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.2e-63 249.2 942 30.0
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.6e-63 248.8 909 29.2
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.5e-63 247.7 943 29.5
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 2.3e-62 245.0 944 29.3
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.7e-62 243.0 909 29.2
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.9e-61 241.9 931 28.7
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.5e-61 241.5 881 29.4
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 8.2e-60 236.5 972 28.4
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.1e-59 234.6 990 27.8
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 6.9e-59 233.4 618 33.7
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.0e-57 229.6 991 27.3
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.1e-56 226.1 1008 26.5
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.1e-56 226.1 929 27.4
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.2e-55 222.6 699 32.9
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.6e-55 220.7 694 32.1
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-54 219.2 855 28.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.8e-54 218.8 921 27.3
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 2.3e-54 218.4 934 28.8
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 5.1e-54 217.2 933 28.9
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 5.1e-54 217.2 933 28.9
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.9e-53 215.3 948 29.0
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 4.3e-53 214.2 941 28.5
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 5.7e-53 213.8 943 28.8
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.3e-52 212.6 950 28.4
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.6e-52 212.2 947 28.6
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.7e-52 211.1 730 30.5
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 6.3e-52 210.3 942 29.5
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 6.9e-51 206.8 936 28.7
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 6.9e-51 206.8 936 28.7
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.0e-50 205.3 920 27.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 5.0e-49 200.7 936 28.5
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 7.7e-42 176.8 942 27.4
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.9e-40 172.2 652 29.4
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 3.6e-39 167.9 941 25.8
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.9e-38 164.5 943 26.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 6.7e-38 163.7 565 30.6
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 1.7e-33 149.1 772 26.4
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.2e-29 136.3 918 25.6
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.5e-29 136.0 913 24.8
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.1e-27 127.9 335 32.5
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.3e-25 122.9 386 29.3
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 2.4e-19 102.1 396 26.3
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.1e-15 89.0 627 23.0
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 2.3e-14 85.5 252 32.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 1.2e-13 83.2 638 24.3
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 4.1e-11 74.7 173 31.2
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.3e-09 68.9 499 24.4
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 7.3e-08 63.9 159 33.3
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 2.8e-07 62.0 242 28.1


User provided reference genes

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