Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 0.0e+00 1421.4 879 100.0
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 0.0e+00 1199.1 887 76.1
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.3e-261 906.7 894 61.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.4e-146 523.9 854 42.2
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 4.6e-145 519.6 869 43.8
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.0e-141 506.5 860 41.4
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.0e-141 506.5 832 41.5
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 5.7e-135 486.1 865 41.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 9.6e-135 485.3 868 39.7
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 9.0e-133 478.8 843 42.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.5e-132 476.5 833 40.7
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.9e-127 461.1 854 40.2
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 4.3e-127 459.9 832 43.1
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 4.3e-127 459.9 832 43.1
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 8.2e-126 455.7 855 42.2
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.6e-124 450.7 886 42.0
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 5.9e-124 449.5 798 41.2
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.0e-123 448.7 879 40.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.0e-123 448.7 869 37.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.3e-123 448.4 837 41.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 1.3e-123 448.4 855 39.2
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.9e-122 444.5 845 38.6
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.9e-122 444.5 860 37.7
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 5.5e-122 443.0 841 42.2
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.2e-121 441.8 853 38.1
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.1e-121 441.0 882 39.9
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.1e-121 441.0 779 41.2
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.1e-121 441.0 850 41.4
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 7.9e-121 439.1 849 39.2
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.9e-121 439.1 889 41.2
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.8e-120 438.0 848 39.0
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.8e-120 438.0 861 37.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 3.9e-120 436.8 849 44.4
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.0e-119 434.5 893 42.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 2.5e-119 434.1 828 38.8
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 4.3e-119 433.3 780 42.8
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-119 432.6 829 38.7
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.7e-119 432.2 787 39.8
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.7e-118 431.4 879 42.2
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.4e-117 428.3 861 37.7
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.8e-117 427.9 697 47.8
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-117 427.6 826 42.0
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 4.1e-117 426.8 811 36.3
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.1e-117 426.8 811 36.3
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 4.1e-117 426.8 865 41.6
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 6.9e-117 426.0 791 41.1
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 9.1e-117 425.6 848 41.2
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.2e-116 425.2 811 36.3
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-116 424.5 833 41.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.4e-116 423.7 830 38.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 4.5e-116 423.3 862 40.6
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 4.5e-116 423.3 864 38.2
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.7e-116 422.5 811 36.3
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.3e-115 421.8 811 35.9
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.7e-115 421.4 834 37.1
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-115 419.9 832 41.8
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 6.5e-115 419.5 813 46.0
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.9e-114 417.9 880 39.9
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-114 417.5 834 41.2
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-114 417.2 838 41.5
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 2.1e-113 414.5 857 41.2
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.1e-113 414.5 813 39.6
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 6.1e-113 412.9 832 38.2
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 7.9e-113 412.5 862 36.7
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.0e-112 412.1 838 44.4
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 3.0e-112 410.6 852 41.7
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 5.1e-112 409.8 843 43.9
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 8.8e-112 409.1 798 41.1
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.1e-111 408.7 827 41.8
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 4.4e-111 406.8 824 42.0
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 5.7e-111 406.4 864 40.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.3e-110 405.2 840 40.6
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.2e-110 404.4 861 40.2
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.4e-109 401.7 931 35.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 3.1e-109 400.6 815 40.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.2e-108 398.7 874 39.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.6e-108 398.3 846 41.1
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 1.6e-108 398.3 890 36.1
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.6e-108 397.5 824 39.9
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 1.7e-107 394.8 808 44.6
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 2.2e-107 394.4 834 44.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.5e-107 392.9 864 36.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.5e-106 391.7 852 36.3
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 2.5e-106 391.0 847 35.9
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 5.5e-106 389.8 807 40.1
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.7e-105 387.5 828 41.1
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.0e-104 384.0 858 38.8
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 5.2e-104 383.3 745 42.8
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.1e-103 382.1 905 38.0
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 7.5e-103 379.4 877 35.8
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 3.5e-100 370.5 663 42.1
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.9e-100 369.8 851 39.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 8.5e-99 365.9 859 39.3
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 8.5e-99 365.9 859 39.1
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 4.2e-98 363.6 846 39.7
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.1e-97 359.8 852 34.9
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.4e-96 358.6 892 37.0
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 5.2e-96 356.7 872 39.1
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 6.8e-96 356.3 861 38.3
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.5e-95 355.1 861 38.1
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.3e-94 352.1 847 33.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 6.3e-94 349.7 823 36.2
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 8.3e-94 349.4 697 39.3
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.2e-92 345.5 874 36.3
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.0e-91 340.1 848 38.8
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 6.5e-91 339.7 786 36.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 4.4e-87 327.0 712 39.9
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.9e-86 323.6 835 34.3
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.8e-85 321.6 464 44.4
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 5.4e-85 320.1 631 39.5
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.7e-83 315.1 646 41.3
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.1e-77 293.9 860 34.4
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 4.6e-76 290.4 867 35.5
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 1.3e-70 272.3 506 36.2
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 1.0e-67 262.7 634 36.9
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.1e-64 252.7 777 29.9
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 7.3e-58 229.9 613 33.8
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 9.5e-58 229.6 556 44.2
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 8.9e-56 223.0 435 39.8
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.1e-53 214.2 228 49.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.4e-46 189.9 408 35.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-41 174.1 394 38.8
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.4e-37 161.8 624 32.5
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 4.6e-36 157.5 371 38.0
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 3.9e-35 154.5 875 27.3
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.1e-33 148.7 177 42.9
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 9.9e-31 139.8 170 44.7
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.1e-29 136.3 141 46.8
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.1e-28 132.1 354 37.0
Zm00001eb088890 Zea mays HOM05D000021 ORTHO05D000010 6.9e-24 117.1 120 57.5
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-22 113.2 157 44.6
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.0e-22 113.2 381 32.8
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.5e-21 107.5 102 51.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.5e-21 107.5 102 51.0
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 5.5e-21 107.5 201 30.3
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-21 107.1 197 39.1
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 9.3e-21 106.7 625 25.3
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-20 105.1 197 51.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-18 99.4 149 41.6
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-18 98.6 103 50.5
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 2.1e-17 95.5 214 34.1
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 5.9e-15 87.4 50 80.0
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 5.9e-15 87.4 50 80.0
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.4e-13 82.8 162 44.4
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.5e-13 82.0 252 32.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.2e-12 79.7 104 50.0
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-12 78.6 173 51.4
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.1e-12 77.4 148 35.8
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 7.9e-12 77.0 173 50.9
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.3e-11 76.3 266 27.4
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-08 65.5 150 33.3
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-08 65.5 149 32.9
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-08 65.5 149 32.9
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-08 65.5 150 33.3
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-08 65.5 149 32.9
HPP92_018393 Vanilla planifolia HOM05D004001 ORTHO05D004559 2.4e-08 65.5 62 58.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 4.1e-08 64.7 110 36.4
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-07 62.0 95 47.4
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.0e-06 57.8 45 64.4
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 8.5e-06 57.0 45 73.3


User provided reference genes

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