Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 6.7e-212 740.3 355 100.0
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 3.8e-175 618.2 358 83.2
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 5.6e-142 508.1 323 73.1
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 1.8e-140 503.1 319 72.7
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 3.1e-140 502.3 326 71.8
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 3.1e-140 502.3 321 69.2
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 6.9e-140 501.1 346 68.2
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 1.5e-139 500.0 323 71.2
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.0e-139 499.6 355 66.8
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 2.0e-139 499.6 341 68.9
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.6e-139 499.2 328 70.4
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 3.4e-139 498.8 322 70.8
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 5.8e-139 498.0 320 72.2
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 5.8e-139 498.0 354 66.7
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 9.9e-139 497.3 343 69.4
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 1.3e-138 496.9 323 71.5
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 1.7e-138 496.5 343 68.2
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 2.9e-138 495.7 335 68.4
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 3.8e-138 495.4 356 67.1
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 3.8e-138 495.4 334 69.2
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 6.4e-138 494.6 323 70.9
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 8.4e-138 494.2 343 68.5
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 8.4e-138 494.2 332 69.3
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 8.4e-138 494.2 354 66.7
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.4e-137 493.4 343 67.9
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.4e-137 493.4 315 71.1
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.9e-137 493.0 343 67.9
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 4.2e-137 491.9 317 71.3
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 5.4e-137 491.5 319 69.6
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 7.1e-137 491.1 343 67.9
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 9.3e-137 490.7 344 67.7
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.2e-136 490.3 323 70.9
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 1.2e-136 490.3 320 70.3
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 1.6e-136 490.0 337 68.2
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 2.1e-136 489.6 352 64.5
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 2.7e-136 489.2 339 67.3
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 2.7e-136 489.2 343 67.6
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 3.5e-136 488.8 335 68.1
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 4.6e-136 488.4 309 71.8
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 4.6e-136 488.4 335 67.5
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 4.6e-136 488.4 349 67.3
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 6.0e-136 488.0 356 65.2
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.0e-135 487.3 317 69.4
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.3e-135 486.9 361 66.5
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 3.9e-135 485.3 317 69.1
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 5.1e-135 485.0 318 69.8
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 8.7e-135 484.2 316 71.5
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.1e-134 483.8 312 69.6
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 2.5e-134 482.6 335 68.7
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 5.6e-134 481.5 320 70.3
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 5.6e-134 481.5 317 68.1
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 7.3e-134 481.1 340 66.2
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 9.6e-134 480.7 357 65.0
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 9.6e-134 480.7 317 68.1
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 2.1e-133 479.6 362 64.1
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 3.6e-133 478.8 338 66.6
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 6.2e-133 478.0 312 67.9
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 6.2e-133 478.0 317 66.9
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.4e-132 476.9 330 68.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.8e-132 476.5 333 67.0
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 2.4e-132 476.1 317 67.8
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 2.4e-132 476.1 322 69.6
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 3.1e-132 475.7 333 67.3
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 3.1e-132 475.7 322 69.3
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 6.9e-132 474.6 321 66.4
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 6.9e-132 474.6 313 70.3
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 9.0e-132 474.2 317 67.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 1.5e-131 473.4 333 66.7
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 2.0e-131 473.0 334 65.6
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 1.3e-130 470.3 344 66.3
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.3e-130 470.3 385 60.0
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.9e-130 469.2 320 66.9
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 3.8e-130 468.8 312 67.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 4.9e-130 468.4 318 68.2
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 6.4e-130 468.0 354 64.7
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 6.4e-130 468.0 352 63.1
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.1e-129 467.2 334 65.3
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.2e-129 465.3 348 65.5
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 5.4e-129 464.9 320 66.6
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 5.4e-129 464.9 330 65.5
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 7.1e-129 464.5 341 66.3
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 4.6e-128 461.8 317 67.2
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 6.0e-128 461.5 322 65.8
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 7.9e-128 461.1 326 65.0
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 7.9e-128 461.1 303 70.3
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 2.3e-127 459.5 326 64.7
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.1e-126 457.2 351 62.1
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.5e-126 456.1 337 66.5
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 5.3e-124 448.4 381 59.8
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.3e-124 448.4 334 65.3
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 7.6e-123 444.5 388 55.7
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 4.9e-122 441.8 319 63.6
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 3.2e-121 439.1 320 66.6
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 9.3e-121 437.6 315 64.8
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 7.9e-120 434.5 373 58.7
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.3e-119 433.7 278 72.3
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 9.3e-113 411.0 278 66.9
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 2.1e-112 409.8 371 58.2
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 4.6e-112 408.7 321 60.4
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 8.2e-109 397.9 316 61.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 6.5e-106 388.3 288 63.5
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 2.0e-102 376.7 344 54.4
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 9.7e-102 374.4 359 54.3
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 1.2e-99 367.5 293 61.4
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 7.2e-97 358.2 294 57.8
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 3.6e-96 355.9 260 64.6
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.0e-87 327.8 214 69.6
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-77 294.3 221 61.1
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 4.7e-72 275.8 206 64.6
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.1e-68 264.6 205 61.5
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 4.7e-64 249.2 198 58.1
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 5.9e-59 232.3 174 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 1.5e-49 201.1 157 57.3
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.7e-45 186.4 184 49.5
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 3.7e-45 186.4 145 63.4
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.3e-41 173.3 126 63.5
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.6e-41 172.6 118 66.1
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.3e-41 172.2 127 63.0
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 4.9e-37 159.5 107 69.2
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 8.3e-37 158.7 131 55.0
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 2.3e-34 150.6 381 28.9
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 8.9e-31 138.7 96 58.3
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-28 131.7 92 64.1
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 4.6e-27 126.3 195 41.5
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 1.1e-25 121.7 73 75.3
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.4e-21 105.9 62 75.8
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 6.4e-21 105.9 67 70.1
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.1e-18 96.3 275 27.6
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 1.3e-16 91.7 73 58.9
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 4.5e-14 83.2 87 52.9
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 4.2e-12 76.6 54 61.1
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.3e-12 75.5 49 67.3
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.7e-11 73.9 47 68.1
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 4.3e-09 66.6 40 75.0
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 9.6e-09 65.5 343 22.4
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 8.1e-08 62.4 191 25.7
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-07 62.0 65 52.3
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 2.4e-07 60.8 49 59.2
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 4.0e-07 60.1 148 30.4
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 6.9e-07 59.3 150 32.0
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 6.9e-07 59.3 150 32.0
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 1.5e-06 58.2 164 28.0
Cre10.g448650 Chlamydomonas reinhardtii HOM05D005821 ORTHO05D006649 1.5e-06 58.2 115 33.9
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 1.5e-06 58.2 199 32.2
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 4.5e-06 56.6 186 30.6
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 7.6e-06 55.8 191 25.1
HanXRQChr01g0023401 Helianthus annuus HOM05D004444 ORTHO05D005246 7.6e-06 55.8 190 25.3
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 7.6e-06 55.8 136 27.2


User provided reference genes

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