Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001760 Zea mays HOM05D001629 ORTHO05D004216 1.1e-79 300.4 217 100.0
Os03g0123800 Oryza sativa ssp. japonica HOM05D001629 ORTHO05D004216 4.8e-51 205.3 218 64.7
Zm00001eb393620 Zea mays HOM05D001629 ORTHO05D004216 1.2e-33 147.5 202 52.5
Os10g0535600 Oryza sativa ssp. japonica HOM05D001629 ORTHO05D004216 1.9e-31 140.2 200 68.0
Zm00001eb021990 Zea mays HOM05D001629 ORTHO05D004216 6.1e-22 108.6 200 63.0
HPP92_001756 Vanilla planifolia HOM05D001629 ORTHO05D004216 6.3e-19 98.6 196 43.4
HPP92_026873 Vanilla planifolia HOM05D001629 ORTHO05D004216 5.0e-16 89.0 191 39.8
HPP92_022226 Vanilla planifolia HOM05D001629 ORTHO05D004216 1.9e-15 87.0 194 37.1
Sc10g0002320 Simmondsia chinensis HOM05D001629 ORTHO05D004216 7.9e-14 81.6 117 50.4
Sc11g0005010 Simmondsia chinensis HOM05D001629 ORTHO05D004216 7.9e-14 81.6 118 47.5
Hund13851 Selenicereus undatus HOM05D001629 ORTHO05D004216 1.4e-13 80.9 124 46.0
vmacro06974 Vaccinium macrocarpon HOM05D001629 ORTHO05D004216 3.0e-13 79.7 127 43.3
CSS0000908 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D004216 3.9e-13 79.3 125 46.4
Sopen05g031270 Solanum pennellii HOM05D001629 ORTHO05D004216 2.0e-12 77.0 138 43.5
CAN.G503.10 Capsicum annuum HOM05D001629 ORTHO05D004216 2.6e-12 76.6 195 34.9
Solyc05g052750.3 Solanum lycopersicum HOM05D001629 ORTHO05D004216 3.3e-12 76.3 192 35.4
PGSC0003DMG400027185 Solanum tuberosum HOM05D001629 ORTHO05D004216 4.4e-12 75.9 192 35.4
TAR633G1117 Trochodendron aralioides HOM05D001629 ORTHO05D004216 4.4e-12 75.9 125 42.4
HPP92_022212 Vanilla planifolia HOM05D001629 ORTHO05D004216 4.4e-12 75.9 218 32.6
Oeu025171.1 Olea europaea HOM05D001629 ORTHO05D004216 5.7e-12 75.5 143 39.9
MD07G1221300 Malus domestica HOM05D001629 ORTHO05D004216 7.4e-12 75.1 124 43.5
Actinidia00946 Actinidia chinensis HOM05D001629 ORTHO05D004216 9.7e-12 74.7 123 42.3
AUR62012240 Chenopodium quinoa HOM05D001629 ORTHO05D004216 9.7e-12 74.7 124 42.7
Potri.008G067700 Populus trichocarpa HOM05D001629 ORTHO05D004216 9.7e-12 74.7 116 43.1
SGA_v2.0_scaffold44G16692 Striga asiatica HOM05D001629 ORTHO05D004216 9.7e-12 74.7 123 47.2
ECA238G0356 Erigeron canadensis HOM05D001629 ORTHO05D004216 1.7e-11 73.9 129 42.6
Oeu048492.2 Olea europaea HOM05D001629 ORTHO05D004216 1.7e-11 73.9 127 44.1
Thhalv10017237m.g Eutrema salsugineum HOM05D001629 ORTHO05D004216 2.2e-11 73.6 125 41.6
Sed0012326 Sechium edule HOM05D001629 ORTHO05D004216 2.2e-11 73.6 183 37.7
TWI09G1333 Tripterygium wilfordii HOM05D001629 ORTHO05D004216 2.2e-11 73.6 125 41.6
CsaV3_6G001810 Cucumis sativus L. HOM05D001629 ORTHO05D004216 2.8e-11 73.2 124 40.3
Dinv17989 Davidia involucrata HOM05D001629 ORTHO05D004216 2.8e-11 73.2 117 46.2
Peaxi162Scf00957g00223 Petunia axillaris HOM05D001629 ORTHO05D004216 2.8e-11 73.2 180 36.1
Cpa.g.sc19.180 Carica papaya HOM05D001629 ORTHO05D004216 3.7e-11 72.8 126 40.5
Lj8A68T45 Lonicera japonica HOM05D001629 ORTHO05D004216 3.7e-11 72.8 119 45.4
AL4G37740 Arabidopsis lyrata HOM05D001629 ORTHO05D004216 4.8e-11 72.4 130 41.5
CARHR135060 Cardamine hirsuta HOM05D001629 ORTHO05D004216 4.8e-11 72.4 125 41.6
ClCG07G004130 Citrullus lanatus HOM05D001629 ORTHO05D004216 4.8e-11 72.4 184 35.9
Glyma.11G229100 Glycine max HOM05D001629 ORTHO05D004216 4.8e-11 72.4 136 40.4
TAR636G0558 Trochodendron aralioides HOM05D001629 ORTHO05D004216 4.8e-11 72.4 124 41.9
HPP92_007334 Vanilla planifolia HOM05D001629 ORTHO05D004216 4.8e-11 72.4 191 36.1
MSTRG.8952 Avicennia marina HOM05D001629 ORTHO05D004216 6.3e-11 72.0 121 44.6
Ciclev10032760m.g Citrus clementina HOM05D001629 ORTHO05D004216 6.3e-11 72.0 125 40.8
Glyma.14G059800 Glycine max HOM05D001629 ORTHO05D004216 6.3e-11 72.0 120 45.8
MD01G1152300 Malus domestica HOM05D001629 ORTHO05D004216 6.3e-11 72.0 123 42.3
Phvul.001G242400 Phaseolus vulgaris HOM05D001629 ORTHO05D004216 6.3e-11 72.0 136 40.4
AT2G40095 Arabidopsis thaliana HOM05D001629 ORTHO05D004216 8.2e-11 71.6 187 32.6
BcaC02g07351 Brassica carinata HOM05D001629 ORTHO05D004216 8.2e-11 71.6 187 33.2
C04p67780 Brassica napus HOM05D001629 ORTHO05D004216 8.2e-11 71.6 187 33.2
BolC4t28281H Brassica oleracea HOM05D001629 ORTHO05D004216 8.2e-11 71.6 187 33.2
MELO3C025189.2 Cucumis melo HOM05D001629 ORTHO05D004216 8.2e-11 71.6 184 35.9
CsaV3_5G010090 Cucumis sativus L. HOM05D001629 ORTHO05D004216 8.2e-11 71.6 184 35.9
HanXRQChr14g0459821 Helianthus annuus HOM05D001629 ORTHO05D004216 8.2e-11 71.6 128 42.2
Nn2g13705 Nelumbo nucifera HOM05D001629 ORTHO05D004216 8.2e-11 71.6 117 46.2
Ah.16g103460 Amaranthus hybridus HOM05D001629 ORTHO05D004216 1.1e-10 71.2 127 43.3
Gohir.A13G015500 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.1e-10 71.2 129 38.8
HanXRQChr07g0202951 Helianthus annuus HOM05D001629 ORTHO05D004216 1.1e-10 71.2 117 45.3
Prupe.2G249300 Prunus persica HOM05D001629 ORTHO05D004216 1.1e-10 71.2 124 41.9
BolC6t37493H Brassica oleracea HOM05D001629 ORTHO05D004216 1.4e-10 70.9 117 42.7
BraA07t29937Z Brassica rapa HOM05D001629 ORTHO05D004216 1.4e-10 70.9 126 40.5
Lsat_1_v5_gn_9_61260 Lactuca sativa HOM05D001629 ORTHO05D004216 1.4e-10 70.9 131 42.7
Oeu005848.1 Olea europaea HOM05D001629 ORTHO05D004216 1.4e-10 70.9 124 44.4
Thecc.10G019900 Theobroma cacao HOM05D001629 ORTHO05D004216 1.4e-10 70.9 182 33.0
BraA03t11481Z Brassica rapa HOM05D001629 ORTHO05D004216 1.8e-10 70.5 189 32.8
CANSAT56G2974 Cannabis sativa HOM05D001629 ORTHO05D004216 1.8e-10 70.5 125 43.2
Carub.0004s2226 Capsella rubella HOM05D001629 ORTHO05D004216 1.8e-10 70.5 187 32.6
Gohir.D06G169300 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.8e-10 70.5 124 40.3
Peaxi162Scf00825g00016 Petunia axillaris HOM05D001629 ORTHO05D004216 1.8e-10 70.5 118 45.8
SalBow6G1496 Salvia bowleyana HOM05D001629 ORTHO05D004216 1.8e-10 70.5 139 43.9
THA.LOC104824315 Tarenaya hassleriana HOM05D001629 ORTHO05D004216 1.8e-10 70.5 133 42.1
vmacro10048 Vaccinium macrocarpon HOM05D001629 ORTHO05D004216 1.8e-10 70.5 125 40.8
C06p23190 Brassica napus HOM05D001629 ORTHO05D004216 2.4e-10 70.1 117 42.7
CiPaw.01G298000 Carya illinoinensis HOM05D001629 ORTHO05D004216 2.4e-10 70.1 123 39.8
Cc02_g06610 Coffea canephora HOM05D001629 ORTHO05D004216 2.4e-10 70.1 182 38.5
Migut.F00678 Erythranthe guttata HOM05D001629 ORTHO05D004216 2.4e-10 70.1 124 42.7
Gohir.D13G016700 Gossypium hirsutum HOM05D001629 ORTHO05D004216 2.4e-10 70.1 123 38.2
Gorai.010G198400 Gossypium raimondii HOM05D001629 ORTHO05D004216 2.4e-10 70.1 124 40.3
Phvul.008G224400 Phaseolus vulgaris HOM05D001629 ORTHO05D004216 2.4e-10 70.1 127 40.2
BcaC01g05434 Brassica carinata HOM05D001629 ORTHO05D004216 3.1e-10 69.7 187 32.6
BolC3t15055H Brassica oleracea HOM05D001629 ORTHO05D004216 3.1e-10 69.7 189 32.8
Dinv10628 Davidia involucrata HOM05D001629 ORTHO05D004216 3.1e-10 69.7 125 43.2
Dinv34390 Davidia involucrata HOM05D001629 ORTHO05D004216 3.1e-10 69.7 125 43.2
Glyma.18G028100 Glycine max HOM05D001629 ORTHO05D004216 3.1e-10 69.7 124 41.9
Gohir.A06G164000 Gossypium hirsutum HOM05D001629 ORTHO05D004216 3.1e-10 69.7 124 40.3
arahy.Tifrunner.gnm1.ann1.2VU9BG Arachis hypogaea HOM05D001629 ORTHO05D004216 4.1e-10 69.3 190 32.6
BcaNung05465 Brassica carinata HOM05D001629 ORTHO05D004216 4.1e-10 69.3 124 41.1
A03p22550 Brassica napus HOM05D001629 ORTHO05D004216 4.1e-10 69.3 187 32.6
Duzib128G1394 Durio zibethinus HOM05D001629 ORTHO05D004216 4.1e-10 69.3 124 40.3
Gorai.013G018400 Gossypium raimondii HOM05D001629 ORTHO05D004216 4.1e-10 69.3 123 38.2
Lalb_Chr18g0052581 Lupinus albus HOM05D001629 ORTHO05D004216 4.1e-10 69.3 124 40.3
Manes.07G128800 Manihot esculenta HOM05D001629 ORTHO05D004216 4.1e-10 69.3 123 40.7
Psat5g127840 Pisum sativum HOM05D001629 ORTHO05D004216 4.1e-10 69.3 129 42.6
Potri.010G189600 Populus trichocarpa HOM05D001629 ORTHO05D004216 4.1e-10 69.3 116 41.4
Sp4g22400 Schrenkiella parvula HOM05D001629 ORTHO05D004216 4.1e-10 69.3 125 40.8
VMungo1383G2947 Vigna mungo HOM05D001629 ORTHO05D004216 4.1e-10 69.3 126 40.5
Nn2g11483 Nelumbo nucifera HOM05D001629 ORTHO05D004216 5.3e-10 68.9 128 44.5
Oeu025640.3 Olea europaea HOM05D001629 ORTHO05D004216 5.3e-10 68.9 180 33.9
QL08p063075 Quercus lobata HOM05D001629 ORTHO05D004216 5.3e-10 68.9 123 41.5
BcaB01g00055 Brassica carinata HOM05D001629 ORTHO05D004216 6.9e-10 68.6 116 42.2
A04p30080 Brassica napus HOM05D001629 ORTHO05D004216 6.9e-10 68.6 187 32.6
C08p31200 Brassica napus HOM05D001629 ORTHO05D004216 6.9e-10 68.6 116 42.2
BolC8t50743H Brassica oleracea HOM05D001629 ORTHO05D004216 6.9e-10 68.6 116 42.2
BraA04t18499Z Brassica rapa HOM05D001629 ORTHO05D004216 6.9e-10 68.6 186 32.3
Migut.F01381 Erythranthe guttata HOM05D001629 ORTHO05D004216 6.9e-10 68.6 131 40.5
Sabra10G0146200 Salix brachista HOM05D001629 ORTHO05D004216 6.9e-10 68.6 123 40.7
BcaB01g00052 Brassica carinata HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 40.0
BcaB02g07673 Brassica carinata HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 41.6
A09p48860 Brassica napus HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 40.0
BraA09t40341Z Brassica rapa HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 40.0
Gohir.A05G329600 Gossypium hirsutum HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 40.0
Lj1A954T15 Lonicera japonica HOM05D001629 ORTHO05D004216 9.1e-10 68.2 137 40.1
Lalb_Chr15g0084141 Lupinus albus HOM05D001629 ORTHO05D004216 9.1e-10 68.2 136 39.7
Medtr3g070400 Medicago truncatula HOM05D001629 ORTHO05D004216 9.1e-10 68.2 125 39.2
Aa31LG5G19510 Aethionema arabicum HOM05D001629 ORTHO05D004216 1.2e-09 67.8 136 41.2
A07p22690 Brassica napus HOM05D001629 ORTHO05D004216 1.2e-09 67.8 136 37.5
Duzib114G0106 Durio zibethinus HOM05D001629 ORTHO05D004216 1.2e-09 67.8 124 41.1
Thhalv10010703m.g Eutrema salsugineum HOM05D001629 ORTHO05D004216 1.2e-09 67.8 182 31.9
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-09 67.8 131 42.0
PSO339G5706 Papaver somniferum HOM05D001629 ORTHO05D004216 1.2e-09 67.8 145 40.0
Rhsim03G0143200 Rhododendron simsii HOM05D001629 ORTHO05D004216 1.2e-09 67.8 124 42.7
Rhsim09G0176900 Rhododendron simsii HOM05D001629 ORTHO05D004216 1.2e-09 67.8 125 40.0
SalBow6G5217 Salvia bowleyana HOM05D001629 ORTHO05D004216 1.2e-09 67.8 199 32.2
TPR.G2531 Trifolium pratense HOM05D001629 ORTHO05D004216 1.2e-09 67.8 136 38.2
AT3G55880 Arabidopsis thaliana HOM05D001629 ORTHO05D004216 1.5e-09 67.4 129 41.1
MSTRG.207 Avicennia marina HOM05D001629 ORTHO05D004216 1.5e-09 67.4 182 31.9
ECA232G0882 Erigeron canadensis HOM05D001629 ORTHO05D004216 1.5e-09 67.4 129 41.1
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.5e-09 67.4 131 42.0
Gohir.D04G067600 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.5e-09 67.4 117 41.0
Gorai.012G076800 Gossypium raimondii HOM05D001629 ORTHO05D004216 1.5e-09 67.4 117 41.0
TWI73G0747 Tripterygium wilfordii HOM05D001629 ORTHO05D004216 1.5e-09 67.4 133 38.3
DCAR_011809 Daucus carota HOM05D001629 ORTHO05D004216 2.0e-09 67.0 136 40.4
FvH4_7g24390 Fragaria vesca HOM05D001629 ORTHO05D004216 2.0e-09 67.0 131 42.0
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.0e-09 67.0 131 38.9
HanXRQChr09g0251471 Helianthus annuus HOM05D001629 ORTHO05D004216 2.0e-09 67.0 127 40.2
AL5G37170 Arabidopsis lyrata HOM05D001629 ORTHO05D004216 3.4e-09 66.2 128 40.6
Glyma.02G256900 Glycine max HOM05D001629 ORTHO05D004216 3.4e-09 66.2 125 42.4
VMungo0647G0798 Vigna mungo HOM05D001629 ORTHO05D004216 3.4e-09 66.2 132 38.6
Lalb_Chr10g0105131 Lupinus albus HOM05D001629 ORTHO05D004216 4.5e-09 65.9 113 44.2
Peaxi162Scf01208g00135 Petunia axillaris HOM05D001629 ORTHO05D004216 4.5e-09 65.9 116 44.0
RcHm_v2.0_Chr1g0370091 Rosa chinensis HOM05D001629 ORTHO05D004216 4.5e-09 65.9 131 41.2
GSVIVG01032833001 Vitis vinifera HOM05D001629 ORTHO05D004216 4.5e-09 65.9 117 42.7
arahy.Tifrunner.gnm1.ann1.MMYB4K Arachis hypogaea HOM05D001629 ORTHO05D004216 5.9e-09 65.5 184 31.5
Lalb_Chr17g0346751 Lupinus albus HOM05D001629 ORTHO05D004216 5.9e-09 65.5 117 41.0
Carub.0005s2265 Capsella rubella HOM05D001629 ORTHO05D004216 7.7e-09 65.1 129 39.5
Manes.10G013500 Manihot esculenta HOM05D001629 ORTHO05D004216 1.0e-08 64.7 126 41.3
PSO801G0446 Papaver somniferum HOM05D001629 ORTHO05D004216 1.0e-08 64.7 145 39.3
ATR0661G149 Amborella trichopoda HOM05D001629 ORTHO05D004216 1.7e-08 63.9 117 40.2
CARHR165980 Cardamine hirsuta HOM05D001629 ORTHO05D004216 1.7e-08 63.9 129 38.8
Eucgr.G03058 Eucalyptus grandis HOM05D001629 ORTHO05D004216 1.7e-08 63.9 128 37.5
Nitab4.5_0004338g0090 Nicotiana tabacum HOM05D001629 ORTHO05D004216 1.7e-08 63.9 185 33.0
CSS0031851 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D004216 2.2e-08 63.5 112 43.8
arahy.Tifrunner.gnm1.ann1.WYEN9E Arachis hypogaea HOM05D001629 ORTHO05D004216 2.9e-08 63.2 137 36.5
CiPaw.02G192000 Carya illinoinensis HOM05D001629 ORTHO05D004216 2.9e-08 63.2 79 50.6
DCAR_024832 Daucus carota HOM05D001629 ORTHO05D004216 2.9e-08 63.2 121 41.3
Lj6g0004743 Lotus japonicus HOM05D001629 ORTHO05D004216 2.9e-08 63.2 124 38.7
Atru.chr12.25 Acer truncatum HOM05D001629 ORTHO05D004216 5.0e-08 62.4 131 38.2
arahy.Tifrunner.gnm1.ann1.01DT97 Arachis hypogaea HOM05D001629 ORTHO05D004216 5.0e-08 62.4 124 39.5
Nitab4.5_0002100g0050 Nicotiana tabacum HOM05D001629 ORTHO05D004216 5.0e-08 62.4 180 33.9
Sp5g06620 Schrenkiella parvula HOM05D001629 ORTHO05D004216 5.0e-08 62.4 129 37.2
Gorai.011G286300 Gossypium raimondii HOM05D001629 ORTHO05D004216 6.5e-08 62.0 129 37.2
Actinidia13934 Actinidia chinensis HOM05D001629 ORTHO05D004216 8.5e-08 61.6 78 50.0
BcaC08g44754 Brassica carinata HOM05D001629 ORTHO05D004216 8.5e-08 61.6 116 41.4
THA.LOC104810574 Tarenaya hassleriana HOM05D001629 ORTHO05D004216 8.5e-08 61.6 132 39.4
Gohir.D10G247800 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.1e-07 61.2 129 36.4
Gohir.A10G235400 Gossypium hirsutum HOM05D001629 ORTHO05D004216 1.4e-07 60.8 129 36.4
Lalb_Chr08g0231731 Lupinus albus HOM05D001629 ORTHO05D004216 1.9e-07 60.5 125 39.2
MBI11_g32502_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D004216 5.5e-07 58.9 199 31.7
Aqoxy4G02578 Aquilegia oxysepala HOM05D001629 ORTHO05D004216 1.6e-06 57.4 123 37.4
MBI04_g35057_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D004216 2.7e-06 56.6 139 36.0
Nitab4.5_0000395g0050 Nicotiana tabacum HOM05D001629 ORTHO05D004216 2.7e-06 56.6 175 32.0
PSO339G5606 Papaver somniferum HOM05D001629 ORTHO05D004216 6.1e-06 55.5 122 38.5


User provided reference genes

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