Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.7e-70 269.2 140 100.0
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 3.4e-58 228.4 142 82.4
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 4.1e-48 194.9 145 71.7
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 1.3e-22 110.2 123 54.5
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.8e-22 109.8 111 56.8
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 6.7e-22 107.8 121 52.9
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 2.1e-20 102.8 110 54.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 4.8e-20 101.7 111 56.8
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.1e-19 100.5 119 52.1
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-19 100.1 130 49.2
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.8e-19 99.8 122 48.4
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.4e-19 99.4 115 51.3
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 2.4e-19 99.4 112 52.7
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-19 99.4 130 49.2
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-19 99.4 130 49.2
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-19 99.4 130 49.2
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.4e-19 99.4 130 49.2
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.1e-19 99.0 130 49.2
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.3e-19 98.2 118 49.2
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 5.3e-19 98.2 112 53.6
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.9e-19 97.8 130 48.5
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.9e-19 97.8 130 48.5
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 9.0e-19 97.4 111 50.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.2e-18 97.1 120 48.3
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-18 96.7 130 48.5
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.5e-18 96.7 112 50.9
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 1.5e-18 96.7 136 47.8
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 2.0e-18 96.3 134 44.0
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-18 96.3 130 48.5
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.6e-18 95.9 124 48.4
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 3.4e-18 95.5 120 50.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 3.4e-18 95.5 110 50.9
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.4e-18 95.5 125 48.0
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 4.5e-18 95.1 109 53.2
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.8e-18 94.7 119 48.7
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 5.8e-18 94.7 110 49.1
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 7.6e-18 94.4 112 49.1
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.0e-17 94.0 111 53.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.7e-17 93.2 122 47.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.7e-17 93.2 125 46.4
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.9e-17 92.4 137 46.7
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 2.9e-17 92.4 141 44.0
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 3.8e-17 92.0 123 44.7
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.9e-17 91.7 112 50.9
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.9e-17 91.7 130 48.5
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 4.9e-17 91.7 132 46.2
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.5e-17 91.3 110 50.9
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.5e-17 91.3 110 51.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 8.4e-17 90.9 122 45.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.1e-16 90.5 112 50.0
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 1.1e-16 90.5 109 45.0
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.4e-16 90.1 121 46.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.5e-16 89.4 126 44.4
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.5e-16 89.4 133 44.4
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.5e-16 89.4 113 49.6
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-16 88.6 111 49.5
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 5.5e-16 88.2 123 47.2
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.5e-16 88.2 130 46.9
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.1e-16 87.8 130 46.9
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 7.1e-16 87.8 110 48.2
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.2e-15 87.0 117 47.0
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.6e-15 86.7 110 45.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.1e-15 86.3 110 44.5
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 2.7e-15 85.9 111 46.8
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 3.5e-15 85.5 110 47.3
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.6e-15 85.1 113 47.8
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.6e-15 85.1 130 45.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 6.0e-15 84.7 125 44.8
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 7.9e-15 84.3 130 43.8
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.3e-14 83.6 122 46.7
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.3e-14 83.6 130 43.1
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.3e-14 83.6 141 41.8
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.3e-14 82.8 113 47.8
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.3e-14 82.8 130 42.3
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 3.0e-14 82.4 111 44.1
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.9e-14 82.0 115 43.5
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 5.1e-14 81.6 112 43.8
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 5.1e-14 81.6 119 42.9
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 8.7e-14 80.9 118 46.6
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.5e-13 80.1 116 40.5
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.9e-13 79.7 112 42.9
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.9e-13 79.7 78 52.6
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 2.5e-13 79.3 117 43.6
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.5e-13 79.3 112 43.8
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 3.3e-13 79.0 128 40.6
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 4.3e-13 78.6 120 41.7
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 5.7e-13 78.2 124 43.5
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 7.4e-13 77.8 125 42.4
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 7.4e-13 77.8 125 42.4
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 9.6e-13 77.4 107 46.7
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 9.6e-13 77.4 121 42.1
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.6e-12 76.6 114 43.0
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.1e-12 76.3 138 38.4
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.1e-12 76.3 124 45.2
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 3.7e-12 75.5 134 39.6
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 8.2e-12 74.3 119 42.9
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.8e-11 73.2 86 50.0
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.8e-11 73.2 105 43.8
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 2.4e-11 72.8 62 59.7
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 2.4e-11 72.8 115 35.7
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 3.1e-11 72.4 116 37.1
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.1e-11 72.4 108 43.5
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 5.3e-11 71.6 116 37.1
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 6.9e-11 71.2 119 42.0
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.0e-10 69.7 73 47.9
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 3.4e-10 68.9 115 36.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.4e-10 68.9 107 40.2
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 5.9e-10 68.2 120 38.3
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.0e-09 67.4 107 40.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.0e-09 67.4 86 47.7
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 1.3e-09 67.0 123 35.8
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.7e-09 66.6 73 52.1
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 3.8e-09 65.5 116 37.1
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 5.0e-09 65.1 73 49.3
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.5e-08 62.8 72 44.4
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 2.5e-08 62.8 82 46.3
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.5e-08 62.8 70 48.6
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 4.2e-08 62.0 94 40.4
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 5.5e-08 61.6 107 36.4
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 5.5e-08 61.6 100 38.0
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 7.9e-07 57.8 86 45.3
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 5.1e-06 55.1 122 36.9
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 6.7e-06 54.7 80 42.5


User provided reference genes

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