Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 7.5e-264 913.3 458 100.0
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 2.2e-183 646.0 457 72.9
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.7e-101 372.5 470 46.6
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 5.4e-97 359.0 473 45.7
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 1.2e-96 357.8 476 44.3
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-96 357.8 462 47.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.9e-94 350.5 466 43.8
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.9e-94 350.5 479 45.3
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.1e-93 347.1 473 45.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.6e-93 346.3 477 43.8
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 6.2e-93 345.5 470 44.9
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 8.1e-93 345.1 471 44.2
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-92 344.7 477 43.4
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.4e-92 343.6 479 44.1
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.1e-92 343.2 468 44.2
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.1e-92 343.2 469 43.9
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 3.1e-92 343.2 467 44.1
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 4.0e-92 342.8 477 42.8
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 5.3e-92 342.4 473 44.6
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.9e-92 342.0 477 43.6
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.2e-91 341.3 464 43.1
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.5e-91 340.9 474 44.5
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.6e-91 340.1 480 42.5
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-91 340.1 474 42.8
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 3.4e-91 339.7 478 44.4
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 3.4e-91 339.7 469 43.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 9.9e-91 338.2 471 42.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 9.9e-91 338.2 474 42.8
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.3e-90 337.8 472 42.6
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.2e-90 337.0 474 42.6
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 2.2e-90 337.0 477 42.1
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.9e-90 336.7 478 43.5
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.9e-90 335.9 463 43.2
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 8.4e-90 335.1 479 43.0
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.1e-89 334.7 478 43.5
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.9e-89 334.0 479 43.6
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 2.4e-89 333.6 472 42.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 3.2e-89 333.2 481 43.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.2e-89 333.2 474 43.0
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.2e-89 332.8 479 43.0
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 7.1e-89 332.0 468 43.6
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.2e-88 331.3 479 42.8
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.1e-88 330.5 475 41.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 2.7e-88 330.1 475 43.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 6.0e-88 328.9 478 42.9
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 7.9e-88 328.6 472 43.0
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.0e-87 328.2 475 42.7
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.0e-87 328.2 458 43.0
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.3e-87 327.8 476 42.0
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.3e-87 327.0 470 43.2
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.0e-87 326.6 479 42.2
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 3.9e-87 326.2 472 41.5
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.1e-87 325.9 477 43.6
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 6.7e-87 325.5 477 43.2
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 6.7e-87 325.5 473 44.0
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 8.7e-87 325.1 477 42.3
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.1e-86 324.7 470 41.1
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.1e-86 324.7 471 41.2
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.5e-86 324.3 465 42.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.3e-86 323.2 476 41.6
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.3e-86 323.2 518 40.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 4.3e-86 322.8 374 48.1
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 9.6e-86 321.6 469 42.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.3e-85 321.2 476 41.4
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.6e-85 320.9 467 41.8
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 3.7e-85 319.7 471 40.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 3.7e-85 319.7 471 40.8
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 4.8e-85 319.3 468 42.1
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-84 318.2 473 43.1
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.8e-84 317.4 471 40.3
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.4e-84 317.0 459 41.0
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.1e-84 316.6 467 41.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.1e-84 316.6 464 42.0
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 3.1e-84 316.6 464 41.8
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 4.0e-84 316.2 464 41.8
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 4.0e-84 316.2 470 42.6
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.2e-83 314.7 467 41.5
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.2e-83 314.7 472 41.3
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.6e-83 313.5 463 41.3
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.3e-82 311.2 479 41.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.3e-82 311.2 474 41.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.2e-82 310.5 472 41.5
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 4.9e-82 309.3 470 42.1
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.4e-81 307.8 375 46.4
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.4e-81 307.0 473 39.3
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 4.2e-81 306.2 457 40.7
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 7.1e-81 305.4 473 40.8
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 7.1e-81 305.4 479 41.1
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 9.3e-81 305.1 457 40.9
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.6e-80 304.3 471 39.9
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.1e-80 303.9 460 41.1
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 3.5e-80 303.1 457 40.7
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 3.5e-80 303.1 474 39.0
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 7.9e-80 302.0 457 41.1
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.3e-79 301.2 462 40.3
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.8e-79 300.8 373 44.2
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 3.0e-79 300.1 424 43.9
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 6.7e-79 298.9 424 42.7
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 5.6e-78 295.8 478 39.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.3e-77 294.7 472 38.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 4.8e-77 292.7 459 37.9
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 8.2e-77 292.0 465 40.6
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.8e-76 290.8 529 35.0
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 2.4e-76 290.4 378 42.6
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.5e-75 286.2 464 38.6
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.4e-74 282.0 470 38.9
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-73 281.2 471 37.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 5.7e-70 269.2 453 38.6
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.2e-67 261.5 468 36.1
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 2.9e-66 256.9 461 37.5
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.2e-65 253.1 472 37.7
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.3e-61 241.5 367 39.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.8e-61 240.4 462 36.1
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-61 240.4 425 37.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.8e-61 240.4 287 46.3
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.1e-60 238.4 287 47.0
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 3.1e-60 236.9 331 43.2
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.0e-58 231.9 467 37.7
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.7e-58 231.1 287 44.6
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.2e-56 224.9 443 36.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.6e-56 223.4 245 47.8
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.8e-53 213.8 418 34.2
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 4.5e-51 206.5 475 35.4
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.5e-49 200.7 366 36.1
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.7e-48 197.2 473 35.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 8.0e-48 195.7 522 30.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.4e-47 194.9 596 29.0
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.5e-46 191.4 386 33.2
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.0e-46 191.0 351 35.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.3e-46 190.3 407 33.4
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.3e-46 190.3 376 34.6
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-45 188.0 461 32.5
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 2.2e-45 187.6 285 42.5
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 4.8e-45 186.4 189 52.9
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 9.1e-44 182.2 187 52.4
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-42 178.3 160 58.1
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.5e-41 174.9 418 31.1
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 2.5e-41 174.1 259 40.9
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 7.2e-41 172.6 288 37.8
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 3.7e-37 160.2 542 28.6
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 4.8e-37 159.8 489 31.1
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 9.1e-36 155.6 175 49.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 1.2e-35 155.2 346 34.4
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.9e-33 147.9 487 30.0
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 4.2e-33 146.7 295 37.3
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 5.5e-33 146.4 238 37.4
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-32 144.1 403 30.5
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.3e-31 141.0 272 34.9
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.1e-28 130.6 339 32.2
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 6.6e-26 122.9 256 32.8
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 8.9e-23 112.5 208 38.5
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 2.6e-22 110.9 110 50.9
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 2.6e-22 110.9 94 58.5
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.3e-21 108.6 184 37.5
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 7.0e-20 102.8 112 46.4
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-19 101.7 97 51.5
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.6e-16 91.7 217 35.0
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.0e-15 87.0 115 42.6
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 4.0e-15 87.0 181 34.8
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 5.8e-14 83.2 124 40.3
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.0e-10 72.4 115 33.0
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-10 71.2 130 40.0
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 3.0e-10 70.9 130 40.0
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.1e-08 64.7 59 52.5
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 4.7e-08 63.5 117 39.3
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.3e-07 61.2 72 45.8


User provided reference genes

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