Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 9.5e-118 426.8 206 100.0
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 1.5e-94 349.7 206 79.6
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 2.6e-75 285.8 199 65.8
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 3.4e-75 285.4 194 66.5
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.4e-75 285.4 194 66.5
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 4.5e-75 285.0 196 65.8
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 4.5e-75 285.0 194 66.0
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 2.5e-73 279.3 194 64.9
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 9.3e-73 277.3 196 63.3
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 2.1e-72 276.2 198 62.6
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.7e-72 275.8 199 63.3
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 4.6e-72 275.0 196 62.8
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 3.9e-71 271.9 194 63.4
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 5.1e-71 271.6 195 61.5
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.7e-71 271.2 212 60.4
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 6.7e-71 271.2 200 61.5
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 6.7e-71 271.2 192 64.1
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.5e-70 270.0 194 62.4
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 3.3e-70 268.9 201 60.7
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 5.7e-70 268.1 194 60.8
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 1.3e-69 266.9 195 61.5
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 1.6e-69 266.5 201 61.2
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 1.6e-69 266.5 196 61.2
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.8e-69 265.8 197 61.4
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.8e-69 265.8 191 63.4
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.8e-69 265.8 191 63.4
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 3.7e-69 265.4 195 61.0
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 3.7e-69 265.4 194 62.9
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 3.7e-69 265.4 196 61.7
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 1.8e-68 263.1 196 61.2
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.8e-68 263.1 197 60.9
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 1.8e-68 263.1 197 60.9
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 2.4e-68 262.7 197 61.4
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 2.4e-68 262.7 192 60.9
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 3.1e-68 262.3 196 62.2
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 3.1e-68 262.3 192 63.0
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 4.1e-68 261.9 192 60.9
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 4.1e-68 261.9 195 60.0
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 6.9e-68 261.2 198 60.1
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 9.1e-68 260.8 192 62.0
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 9.1e-68 260.8 194 60.3
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.2e-67 260.4 195 59.0
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.5e-67 260.0 192 59.9
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.5e-67 260.0 196 59.2
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 2.0e-67 259.6 179 65.9
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 3.4e-67 258.8 194 58.8
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.4e-67 258.8 176 66.5
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 7.7e-67 257.7 192 61.5
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 1.7e-66 256.5 195 59.0
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.7e-66 256.5 195 59.5
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 2.2e-66 256.1 196 61.7
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 3.8e-66 255.4 194 59.3
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 5.0e-66 255.0 180 63.9
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 5.0e-66 255.0 198 61.1
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 5.0e-66 255.0 190 58.9
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 5.0e-66 255.0 195 59.0
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 8.5e-66 254.2 195 59.0
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 8.5e-66 254.2 195 57.9
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 4.2e-65 251.9 195 57.9
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 4.2e-65 251.9 194 57.2
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 9.4e-65 250.8 193 58.5
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.2e-64 250.4 195 57.9
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.2e-64 250.4 195 57.9
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 1.6e-64 250.0 203 58.6
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.6e-64 250.0 212 57.1
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 2.1e-64 249.6 195 57.4
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 2.1e-64 249.6 194 57.7
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 2.1e-64 249.6 194 57.7
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 2.7e-64 249.2 194 58.2
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 2.7e-64 249.2 194 58.8
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 2.7e-64 249.2 194 58.2
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 6.1e-64 248.1 194 57.7
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.4e-63 246.9 169 65.1
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 1.8e-63 246.5 198 58.1
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 3.9e-63 245.4 190 58.9
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 4.4e-62 241.9 203 56.7
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.7e-61 240.0 197 54.8
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 3.7e-61 238.8 199 58.3
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 6.3e-61 238.0 162 66.7
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 8.2e-61 237.7 163 65.0
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 1.4e-60 236.9 194 54.6
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.1e-60 235.7 169 64.5
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.5e-59 233.4 162 64.8
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 4.5e-59 231.9 192 53.6
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 1.3e-58 230.3 197 53.3
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 3.2e-57 225.7 167 61.7
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 7.2e-57 224.6 195 53.3
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 2.3e-55 219.5 198 52.0
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 3.9e-55 218.8 156 62.8
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.6e-54 216.1 166 60.2
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 1.4e-52 210.3 194 54.1
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 5.3e-52 208.4 199 51.3
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 9.1e-52 207.6 167 56.9
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.0e-51 206.5 164 58.5
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 2.6e-51 206.1 195 47.7
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 5.9e-51 204.9 195 50.8
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 7.7e-51 204.5 217 47.5
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 3.8e-50 202.2 193 48.7
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 2.2e-45 186.4 192 47.9
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.8e-44 183.3 199 48.2
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.1e-44 182.2 133 60.9
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.1e-44 182.2 133 60.9
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 4.2e-41 172.2 132 57.6
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 3.0e-39 166.0 110 67.3
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 8.8e-39 164.5 173 47.4
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 3.7e-37 159.1 221 39.8
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 2.0e-30 136.7 111 58.6
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 7.5e-30 134.8 105 61.0
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 9.8e-30 134.4 269 32.7
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-29 134.0 92 64.1
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 4.9e-29 132.1 179 40.2
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 4.3e-25 119.0 68 83.8
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 2.1e-24 116.7 92 57.6
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.0e-23 114.4 57 94.7
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 3.4e-22 109.4 75 68.0
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 4.1e-20 102.4 105 47.6
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 2.3e-18 96.7 145 34.5
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 4.7e-16 89.0 227 29.5
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 4.1e-12 75.9 52 65.4
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 9.2e-12 74.7 62 61.3
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 4.7e-08 62.4 44 59.1


User provided reference genes

Program Settings