Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 1.6e-86 322.8 171 100.0
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 3.3e-63 245.4 172 77.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.1e-46 187.6 167 61.1
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 1.1e-45 187.2 170 60.0
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 1.4e-45 186.8 170 58.8
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.4e-45 186.0 168 59.5
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.5e-44 183.3 171 57.9
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.0e-44 183.0 180 57.2
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.0e-44 183.0 168 59.5
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 2.0e-44 183.0 171 57.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.4e-44 182.2 170 57.1
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 3.4e-44 182.2 170 57.1
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.4e-44 182.2 173 57.8
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 4.4e-44 181.8 169 60.4
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 4.4e-44 181.8 168 58.9
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.8e-44 181.4 170 57.6
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 5.8e-44 181.4 170 59.4
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 7.6e-44 181.0 173 58.4
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.7e-43 179.9 171 59.1
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.7e-43 179.9 166 60.2
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 4.9e-43 178.3 171 57.9
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.1e-42 177.2 173 58.4
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.1e-42 177.2 170 57.6
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.9e-42 176.4 176 57.4
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.9e-42 176.4 172 61.6
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.9e-42 176.4 170 57.1
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.9e-42 176.4 173 56.1
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.9e-42 176.4 178 57.9
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.4e-42 174.9 176 56.8
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 7.1e-42 174.5 170 57.6
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.6e-41 173.3 171 57.3
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.1e-41 172.9 167 56.3
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 1.3e-40 170.2 170 57.1
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.3e-40 170.2 169 59.8
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.3e-40 170.2 166 59.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.3e-40 169.5 174 56.3
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 2.3e-40 169.5 170 55.9
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 3.0e-40 169.1 172 55.8
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 3.9e-40 168.7 169 56.8
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 5.1e-40 168.3 173 56.1
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 6.6e-40 167.9 172 57.0
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.1e-39 167.2 170 55.3
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.5e-39 166.8 166 56.0
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.3e-39 165.6 170 55.9
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 9.6e-39 164.1 169 56.2
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 3.6e-38 162.2 171 54.4
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.8e-38 161.8 179 55.9
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.8e-38 161.8 174 52.3
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 6.2e-38 161.4 186 50.5
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 8.1e-38 161.0 176 52.3
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 6.9e-37 157.9 180 52.8
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 9.0e-37 157.5 173 51.4
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.5e-36 156.8 173 52.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.4e-36 155.6 173 51.4
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 4.4e-36 155.2 173 51.4
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 5.8e-36 154.8 173 51.4
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 5.8e-36 154.8 173 51.4
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 7.6e-36 154.5 174 51.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 7.6e-36 154.5 175 53.1
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.3e-35 153.7 171 49.1
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.3e-35 153.7 173 50.9
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.7e-35 153.3 124 65.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.2e-35 152.9 166 50.6
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 2.9e-35 152.5 173 52.0
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 7.1e-34 147.9 170 53.5
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 9.3e-34 147.5 168 50.6
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 9.3e-34 147.5 126 58.7
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.2e-33 147.1 169 49.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.2e-33 147.1 164 49.4
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 2.1e-33 146.4 171 52.0
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.7e-33 146.0 112 66.1
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.7e-33 146.0 172 48.3
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 3.5e-33 145.6 104 71.2
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 4.6e-33 145.2 180 51.7
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 2.3e-32 142.9 177 48.0
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 5.1e-32 141.7 169 47.9
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 8.7e-32 141.0 161 49.7
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 8.7e-32 141.0 170 47.1
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 8.7e-32 141.0 163 48.5
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 8.7e-32 141.0 166 51.8
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.7e-32 141.0 169 47.9
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.1e-31 140.6 133 56.4
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.5e-31 140.2 166 45.8
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.9e-31 139.8 171 48.5
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.9e-31 139.8 168 51.8
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.5e-31 139.4 178 48.9
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 2.5e-31 139.4 178 48.9
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 4.3e-31 138.7 169 48.5
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.6e-31 138.3 134 55.2
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 9.6e-31 137.5 178 47.8
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 9.6e-31 137.5 176 45.5
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 9.6e-31 137.5 173 48.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.6e-30 136.7 164 47.6
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 2.1e-30 136.3 170 48.8
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.6e-30 135.6 169 46.2
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 3.6e-30 135.6 168 47.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 4.8e-30 135.2 238 39.1
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 4.8e-30 135.2 168 46.4
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 1.8e-29 133.3 170 45.3
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 4.0e-29 132.1 169 45.0
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 4.0e-29 132.1 153 50.3
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 5.3e-29 131.7 169 49.1
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 5.3e-29 131.7 162 46.9
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 6.9e-29 131.3 169 43.8
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.2e-28 130.6 173 45.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.2e-28 130.6 170 44.1
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 3.4e-28 129.0 107 60.7
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 7.6e-28 127.9 187 44.9
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 7.6e-28 127.9 139 50.4
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 9.9e-28 127.5 113 58.4
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 2.4e-26 122.9 179 45.8
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 2.4e-26 122.9 179 43.0
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.2e-26 122.5 169 43.8
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 4.2e-26 122.1 133 51.1
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.4e-26 121.7 134 51.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 5.4e-26 121.7 175 40.0
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 7.1e-26 121.3 113 56.6
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 7.1e-26 121.3 159 45.3
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.6e-25 120.2 171 42.7
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 7.9e-25 117.9 181 43.6
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 1.8e-24 116.7 183 38.3
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 5.1e-24 115.2 170 46.5
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.9e-23 113.2 81 72.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 9.6e-23 110.9 169 41.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 5.3e-21 105.1 107 51.4
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 9.0e-21 104.4 169 40.2
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 2.0e-20 103.2 130 46.2
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.8e-20 101.7 107 50.5
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.2e-17 94.0 74 66.2
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 2.1e-17 93.2 107 55.1
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.7e-17 92.8 118 51.7
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 9.0e-13 77.8 99 47.5
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 2.0e-12 76.6 105 44.8
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 2.0e-12 76.6 105 44.8
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 8.4e-11 71.2 112 38.4
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 1.4e-10 70.5 112 34.8
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 2.1e-09 66.6 63 55.6
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.2e-06 56.6 63 47.6
SMO347G0178 Selaginella moellendorffii HOM05D004876 ORTHO05D005488 6.3e-06 55.1 101 35.6


User provided reference genes

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