Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000900 Zea mays HOM05D019640 ORTHO05D009691 6.3e-129 464.2 240 100.0
Zm00001eb085900 Zea mays HOM05D019640 ORTHO05D009691 2.5e-77 292.7 213 78.4
Zm00001eb281830 Zea mays HOM05D019640 ORTHO05D009691 4.7e-60 235.3 240 63.3
Zm00001eb214770 Zea mays HOM05D019640 ORTHO05D009691 1.9e-48 196.8 168 73.8
Zm00001eb218100 Zea mays HOM05D019640 ORTHO05D009691 4.3e-29 132.5 67 94.0
Prupe.5G129000 Prunus persica HOM05D007894 ORTHO05D009691 4.1e-27 125.9 260 38.1
RcHm_v2.0_Chr7g0186841 Rosa chinensis HOM05D007894 ORTHO05D009691 2.0e-26 123.6 255 37.6
CiPaw.11G113300 Carya illinoinensis HOM05D007894 ORTHO05D009691 5.9e-26 122.1 268 39.2
RcHm_v2.0_Chr7g0186241 Rosa chinensis HOM05D007894 ORTHO05D009691 5.9e-26 122.1 257 37.4
PGR042G1438 Punica granatum HOM05D007894 ORTHO05D009691 2.2e-25 120.2 269 40.1
Sed0027072 Sechium edule HOM05D007894 ORTHO05D009691 8.5e-25 118.2 257 38.5
MD14G1125500 Malus domestica HOM05D007894 ORTHO05D009691 1.1e-24 117.9 262 36.6
Atru.chr9.1896 Acer truncatum HOM05D007894 ORTHO05D009691 3.2e-24 116.3 269 34.2
FvH4_5g10980 Fragaria vesca HOM05D007894 ORTHO05D009691 4.2e-24 115.9 255 35.3
MBI12_g30970_MAGBIO Magnolia biondii HOM05D007894 ORTHO05D009691 5.5e-24 115.5 260 38.8
FAN13G0186 Fragaria x ananassa HOM05D007894 ORTHO05D009691 7.2e-24 115.2 255 34.9
FAN18G0782 Fragaria x ananassa HOM05D007894 ORTHO05D009691 7.2e-24 115.2 255 34.9
Lj8P201T33 Lonicera japonica HOM05D007894 ORTHO05D009691 1.6e-23 114.0 257 37.4
TWI81G0638 Tripterygium wilfordii HOM05D007894 ORTHO05D009691 1.6e-23 114.0 253 36.4
MD06G1117900 Malus domestica HOM05D007894 ORTHO05D009691 2.7e-23 113.2 244 36.5
FAN04G2047 Fragaria x ananassa HOM05D007894 ORTHO05D009691 6.1e-23 112.1 258 36.0
COL.COLO4_10790 Corchorus olitorius HOM05D007894 ORTHO05D009691 1.0e-22 111.3 272 36.4
FAN08G2177 Fragaria x ananassa HOM05D007894 ORTHO05D009691 1.3e-22 110.9 259 35.9
MSTRG.12199 Avicennia marina HOM05D007894 ORTHO05D009691 1.8e-22 110.5 252 37.3
TAR629G0466 Trochodendron aralioides HOM05D007894 ORTHO05D009691 1.8e-22 110.5 263 35.7
Haze_09166 Corylus avellana HOM05D007894 ORTHO05D009691 5.1e-22 109.0 253 36.8
Cfa011931 Carpinus fangiana HOM05D007894 ORTHO05D009691 1.3e-20 104.4 252 35.7
Sp7g22070 Schrenkiella parvula HOM05D007894 ORTHO05D009691 1.3e-20 104.4 258 37.6
Aa31LG6G7360 Aethionema arabicum HOM05D007894 ORTHO05D009691 3.7e-20 102.8 242 36.4
Thecc.03G221700 Theobroma cacao HOM05D007894 ORTHO05D009691 6.3e-20 102.1 263 34.2
MELO3C005782.2 Cucumis melo HOM05D007894 ORTHO05D009691 1.1e-19 101.3 247 34.8
Gorai.004G129900 Gossypium raimondii HOM05D007894 ORTHO05D009691 1.8e-19 100.5 258 33.3
Gohir.D08G123100 Gossypium hirsutum HOM05D007894 ORTHO05D009691 2.4e-19 100.1 258 33.3
ClCG01G001550 Citrullus lanatus HOM05D007894 ORTHO05D009691 3.1e-19 99.8 266 33.8
BcaNung01115 Brassica carinata HOM05D007894 ORTHO05D009691 6.9e-19 98.6 270 35.2
THA.LOC104815238 Tarenaya hassleriana HOM05D007894 ORTHO05D009691 1.5e-18 97.4 246 35.4
CsaV3_5G001720 Cucumis sativus L. HOM05D007894 ORTHO05D009691 3.4e-18 96.3 264 33.3
Manes.02G003300 Manihot esculenta HOM05D007894 ORTHO05D009691 5.9e-18 95.5 269 34.2
Nitab4.5_0004251g0020 Nicotiana tabacum HOM05D007894 ORTHO05D009691 1.0e-17 94.7 256 35.5
HanXRQChr03g0086121 Helianthus annuus HOM05D007894 ORTHO05D009691 1.7e-17 94.0 260 35.0
Sc16g0010770 Simmondsia chinensis HOM05D007894 ORTHO05D009691 1.7e-17 94.0 273 34.8
Lsat_1_v5_gn_3_14101 Lactuca sativa HOM05D007894 ORTHO05D009691 2.9e-17 93.2 262 34.4
Oeu043316.1 Olea europaea HOM05D007894 ORTHO05D009691 2.9e-17 93.2 242 35.5
QL02p028226 Quercus lobata HOM05D007894 ORTHO05D009691 2.9e-17 93.2 274 31.0
Dinv12925 Davidia involucrata HOM05D007894 ORTHO05D009691 8.5e-17 91.7 246 35.8
Duzib084G0115 Durio zibethinus HOM05D007894 ORTHO05D009691 8.5e-17 91.7 262 32.4
Potri.003G147800 Populus trichocarpa HOM05D007894 ORTHO05D009691 1.1e-16 91.3 258 34.5
Carub.0007s1699 Capsella rubella HOM05D007894 ORTHO05D009691 1.4e-16 90.9 264 33.3
Gohir.A12G239800 Gossypium hirsutum HOM05D007894 ORTHO05D009691 1.4e-16 90.9 264 34.1
Nitab4.5_0007063g0010 Nicotiana tabacum HOM05D007894 ORTHO05D009691 1.4e-16 90.9 258 35.7
Zm00001eb048180 Zea mays HOM05D019640 ORTHO05D009691 1.9e-16 90.5 67 71.6
Nn3g18883 Nelumbo nucifera HOM05D007894 ORTHO05D009691 3.2e-16 89.7 240 32.9
Gohir.A08G110200 Gossypium hirsutum HOM05D007894 ORTHO05D009691 4.2e-16 89.4 255 32.5
Sopen08g031270 Solanum pennellii HOM05D007894 ORTHO05D009691 4.2e-16 89.4 247 32.4
DCAR_006541 Daucus carota HOM05D007894 ORTHO05D009691 9.4e-16 88.2 271 33.6
Aqoxy7G00025 Aquilegia oxysepala HOM05D007894 ORTHO05D009691 1.6e-15 87.4 264 30.3
CANSAT21G2064 Cannabis sativa HOM05D007894 ORTHO05D009691 2.7e-15 86.7 267 33.3
Gorai.008G258200 Gossypium raimondii HOM05D007894 ORTHO05D009691 6.1e-15 85.5 243 35.0
PGSC0003DMG400012120 Solanum tuberosum HOM05D007894 ORTHO05D009691 1.0e-14 84.7 249 32.1
CiPaw.12G077900 Carya illinoinensis HOM05D007894 ORTHO05D009691 1.8e-14 84.0 278 30.9
Migut.O00947 Erythranthe guttata HOM05D007894 ORTHO05D009691 1.8e-14 84.0 215 35.3
CARHR231510 Cardamine hirsuta HOM05D007894 ORTHO05D009691 3.9e-14 82.8 259 32.8
Ciclev10021739m.g Citrus clementina HOM05D007894 ORTHO05D009691 8.8e-14 81.6 267 30.3
Potri.001G082500 Populus trichocarpa HOM05D007894 ORTHO05D009691 8.8e-14 81.6 260 35.0
Thhalv10026087m.g Eutrema salsugineum HOM05D007894 ORTHO05D009691 1.1e-13 81.3 258 31.8
BcaC09g50910 Brassica carinata HOM05D007894 ORTHO05D009691 2.6e-13 80.1 241 32.0
Sabra03G0106300 Salix brachista HOM05D007894 ORTHO05D009691 2.6e-13 80.1 236 35.2
Cpa.g.sc175.21 Carica papaya HOM05D007894 ORTHO05D009691 3.3e-13 79.7 238 33.2
Gohir.D12G241000 Gossypium hirsutum HOM05D007894 ORTHO05D009691 3.3e-13 79.7 241 34.0
ECA246G0434 Erigeron canadensis HOM05D007894 ORTHO05D009691 1.3e-12 77.8 274 31.4
A01p15370 Brassica napus HOM05D007894 ORTHO05D009691 2.2e-12 77.0 241 32.4
C01p19320 Brassica napus HOM05D007894 ORTHO05D009691 3.7e-12 76.3 222 32.0
BolC1t01858H Brassica oleracea HOM05D007894 ORTHO05D009691 3.7e-12 76.3 222 32.0
Peaxi162Scf00074g00316 Petunia axillaris HOM05D007894 ORTHO05D009691 4.8e-12 75.9 236 33.1
HPP92_007394 Vanilla planifolia HOM05D007894 ORTHO05D009691 1.2e-10 71.2 130 37.7
CDE12G0970 Ceratophyllum demersum HOM05D007894 ORTHO05D009691 2.9e-09 66.6 162 29.6
unitig_62.g23645 Utricularia gibba HOM05D007894 ORTHO05D009691 6.5e-09 65.5 120 39.2
Ah.03g148140 Amaranthus hybridus HOM05D007894 ORTHO05D009691 1.4e-08 64.3 245 29.8
Sabra03G0107400 Salix brachista HOM05D001294 ORTHO05D009691 4.2e-08 62.8 221 30.3
AL7G29180 Arabidopsis lyrata HOM05D007894 ORTHO05D009691 9.4e-08 61.6 260 29.2
AT4G24110 Arabidopsis thaliana HOM05D007894 ORTHO05D009691 4.7e-07 59.3 259 28.2
CDE07G1250 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 6.1e-07 58.9 179 30.2


User provided reference genes

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