Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 3.0e-85 318.5 169 100.0
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.5e-55 219.2 159 74.8
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.7e-27 125.6 194 45.9
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.4e-26 123.6 202 47.5
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.7e-24 116.7 186 46.8
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 8.6e-16 87.8 183 38.8
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.5e-15 87.0 184 38.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 4.3e-15 85.5 178 37.1
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 4.7e-14 82.0 176 38.6
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 8.1e-14 81.3 184 38.6
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 8.1e-14 81.3 187 36.9
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-13 80.9 155 41.3
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.4e-13 80.5 169 37.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.4e-13 80.5 182 36.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.8e-13 80.1 168 37.5
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.3e-13 79.7 170 40.6
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.3e-13 79.7 170 40.6
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 6.8e-13 78.2 176 38.1
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 8.9e-13 77.8 148 41.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 8.9e-13 77.8 148 41.2
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.5e-12 77.0 176 34.7
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 2.6e-12 76.3 172 39.0
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.5e-12 74.7 169 40.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 9.9e-12 74.3 115 42.6
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.7e-11 73.6 186 41.4
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.7e-11 73.6 182 38.5
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 2.2e-11 73.2 178 38.8
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.2e-11 73.2 181 38.7
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.7e-11 72.4 108 47.2
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.7e-11 72.4 171 35.7
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.7e-11 72.4 196 37.8
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.9e-11 72.0 189 36.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.4e-11 71.6 169 39.6
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 6.4e-11 71.6 177 38.4
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 6.4e-11 71.6 109 47.7
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 8.3e-11 71.2 150 40.0
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.3e-11 71.2 169 39.1
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.3e-11 71.2 151 41.1
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 8.3e-11 71.2 170 34.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.1e-10 70.9 190 34.2
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-10 70.9 175 38.3
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 1.1e-10 70.9 124 38.7
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.9e-10 70.1 182 35.2
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-10 70.1 147 40.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-10 70.1 153 35.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-10 69.7 161 33.5
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.4e-10 69.7 153 35.9
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.4e-10 69.7 189 36.5
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.4e-10 69.7 184 35.3
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 3.2e-10 69.3 91 42.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.2e-10 69.3 185 35.1
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 4.1e-10 68.9 156 40.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.1e-10 68.9 83 51.8
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.1e-10 68.9 200 36.0
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 5.4e-10 68.6 181 34.3
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 5.4e-10 68.6 80 50.0
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 5.4e-10 68.6 80 50.0
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.1e-10 68.2 166 39.8
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 7.1e-10 68.2 162 42.6
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 9.2e-10 67.8 181 34.3
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 9.2e-10 67.8 151 36.4
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 9.2e-10 67.8 180 34.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.2e-09 67.4 92 50.0
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.2e-09 67.4 185 36.2
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-09 67.4 151 40.4
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.2e-09 67.4 151 40.4
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-09 67.0 192 36.5
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.6e-09 67.0 192 36.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.7e-09 66.2 179 36.9
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 3.5e-09 65.9 80 48.8
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 3.5e-09 65.9 173 37.0
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-09 65.9 190 34.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.6e-09 65.5 188 36.7
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 6.0e-09 65.1 79 53.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 6.0e-09 65.1 72 50.0
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 7.8e-09 64.7 182 35.2
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.8e-09 64.7 72 50.0
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-08 64.3 104 41.3
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-08 64.3 104 41.3
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.0e-08 64.3 75 49.3
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.0e-08 64.3 72 52.8
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.0e-08 64.3 72 52.8
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.3e-08 63.9 96 41.7
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.7e-08 63.5 182 34.6
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.7e-08 63.5 169 33.1
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.7e-08 63.5 81 49.4
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.7e-08 63.5 188 34.6
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.3e-08 63.2 72 51.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.3e-08 63.2 179 33.0
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.0e-08 62.8 187 35.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.0e-08 62.8 141 39.0
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 3.9e-08 62.4 75 48.0
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.9e-08 62.4 123 40.7
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 3.9e-08 62.4 199 32.7
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 3.9e-08 62.4 150 40.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 3.9e-08 62.4 88 40.9
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 5.1e-08 62.0 136 38.2
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 6.6e-08 61.6 188 34.0
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 6.6e-08 61.6 191 33.5
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 8.6e-08 61.2 192 34.4
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 8.6e-08 61.2 177 34.5
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 8.6e-08 61.2 132 38.6
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 8.6e-08 61.2 191 34.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.1e-07 60.8 188 34.0
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.1e-07 60.8 193 34.2
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.5e-07 60.5 176 34.7
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.9e-07 60.1 164 37.2
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.9e-07 60.1 76 47.4
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 3.3e-07 59.3 197 35.5
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.3e-07 59.3 85 43.5
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 7.3e-07 58.2 139 38.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 9.5e-07 57.8 162 34.6
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 9.5e-07 57.8 182 33.0
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 9.5e-07 57.8 88 42.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.6e-06 57.0 57 52.6
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.6e-06 57.0 184 33.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.1e-06 56.6 189 36.0
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-06 56.6 185 33.0
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 3.6e-06 55.8 58 51.7
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 3.6e-06 55.8 161 33.5
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 3.6e-06 55.8 65 49.2
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 3.6e-06 55.8 84 41.7
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.7e-06 55.5 177 33.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 6.2e-06 55.1 71 52.1
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 8.1e-06 54.7 74 45.9
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 8.1e-06 54.7 42 61.9


User provided reference genes

Program Settings