Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.3e-185 652.9 324 100.0
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 3.7e-132 475.3 326 75.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.6e-82 310.5 304 52.6
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.5e-82 309.3 304 52.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.9e-81 305.8 293 51.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 8.6e-81 304.7 295 53.6
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.5e-80 303.9 291 52.2
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.5e-80 303.9 296 53.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 3.3e-80 302.8 290 50.3
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 3.3e-80 302.8 290 50.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.3e-80 302.4 289 54.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-79 299.7 292 51.4
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.8e-79 299.7 292 53.4
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 4.7e-79 298.9 292 52.1
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.2e-79 298.5 305 50.2
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 1.1e-78 297.7 293 51.5
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.4e-78 297.4 295 51.2
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.8e-78 297.0 287 54.4
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.8e-78 297.0 290 54.1
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 5.2e-78 295.4 300 50.0
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 5.2e-78 295.4 293 51.9
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 3.4e-77 292.7 283 55.5
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.4e-77 292.7 296 51.0
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.8e-77 292.0 315 48.3
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 7.5e-77 291.6 305 49.8
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.5e-77 291.6 289 52.6
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.8e-77 291.2 287 50.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.3e-76 290.8 283 51.9
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 2.9e-76 289.7 309 51.5
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 3.7e-76 289.3 289 52.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 6.4e-76 288.5 300 50.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 8.3e-76 288.1 286 51.0
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 8.3e-76 288.1 296 50.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.1e-75 287.7 296 50.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-75 287.3 303 50.2
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.9e-75 287.0 296 53.0
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.9e-75 287.0 292 52.1
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.4e-75 286.6 296 53.0
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.4e-75 286.6 296 50.0
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 2.4e-75 286.6 301 50.8
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.2e-75 286.2 299 49.8
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.2e-75 286.2 299 49.8
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 9.2e-75 284.6 294 49.7
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 9.2e-75 284.6 285 49.1
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 9.2e-75 284.6 289 51.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-74 284.3 299 52.8
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.6e-74 283.9 301 50.8
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.7e-74 283.1 305 50.8
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.0e-74 282.0 299 52.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.0e-74 282.0 303 52.1
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 6.0e-74 282.0 297 49.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 7.8e-74 281.6 294 49.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.0e-73 281.2 284 51.1
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 8.6e-73 278.1 306 48.7
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-72 277.7 284 50.7
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.5e-72 277.3 274 50.0
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.5e-72 277.3 304 50.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.5e-72 276.6 270 50.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.5e-72 276.6 293 48.8
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.6e-72 275.4 308 49.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 7.3e-72 275.0 284 49.3
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.6e-71 273.9 277 50.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 2.1e-71 273.5 295 49.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.7e-71 272.3 284 50.4
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.7e-71 272.3 282 51.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 4.7e-71 272.3 297 49.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 6.2e-71 271.9 284 50.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 6.2e-71 271.9 284 50.0
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 6.2e-71 271.9 284 50.4
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.1e-70 271.2 289 48.1
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.4e-70 270.8 292 47.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-70 270.4 273 50.9
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 2.3e-70 270.0 328 46.3
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 4.0e-70 269.2 303 49.2
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.2e-70 268.9 288 51.0
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 5.2e-70 268.9 283 50.9
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.0e-69 266.9 297 47.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.0e-69 266.9 352 45.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.6e-69 266.5 262 50.4
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.4e-69 266.2 272 48.5
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 5.8e-69 265.4 279 51.3
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 9.9e-69 264.6 280 51.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.3e-68 264.2 301 47.5
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.3e-68 264.2 286 46.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.7e-68 263.8 260 51.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 8.3e-68 261.5 274 51.1
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 5.4e-67 258.8 293 47.4
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.6e-66 257.3 282 47.2
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 6.0e-66 255.4 238 55.9
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.7e-65 253.8 303 47.2
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.3e-65 253.4 291 47.8
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.1e-64 251.1 286 48.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.3e-64 248.4 261 47.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.1e-63 246.9 293 46.8
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 6.2e-63 245.4 282 47.9
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.4e-62 243.4 207 58.0
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.8e-62 241.9 326 41.7
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.0e-61 240.4 227 54.2
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.6e-61 240.0 291 43.6
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 4.2e-59 232.6 278 46.8
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 5.4e-59 232.3 218 55.5
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.2e-58 231.1 293 42.7
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 1.6e-58 230.7 280 46.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 8.7e-57 224.9 221 51.1
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.3e-55 221.1 283 44.2
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.6e-55 219.5 219 52.1
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.8e-54 217.2 288 41.7
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.8e-54 217.2 220 52.7
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.3e-54 215.7 215 49.8
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.5e-53 214.2 330 38.2
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.4e-53 213.0 293 43.7
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 4.4e-53 212.6 292 42.8
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.8e-52 209.5 193 53.9
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.2e-50 204.5 298 38.3
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.7e-50 203.4 206 48.1
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.5e-50 203.0 290 43.4
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 7.8e-50 201.8 290 38.6
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 5.1e-49 199.1 230 50.0
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.1e-47 193.7 285 40.7
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.4e-46 191.0 295 40.0
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.2e-45 188.0 182 50.5
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.5e-45 186.0 291 38.1
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.9e-43 180.6 162 56.2
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 5.5e-35 152.5 267 37.1
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 9.3e-35 151.8 178 43.8
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.0e-33 148.3 174 47.1
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.1e-32 144.8 137 50.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 8.2e-31 138.7 207 42.0
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 2.2e-28 130.6 137 48.2
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 4.6e-26 122.9 161 46.0
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.3e-25 120.6 109 54.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.5e-24 117.1 109 53.2
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 3.1e-22 110.2 253 30.4
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 6.9e-22 109.0 177 35.6
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 1.5e-21 107.8 383 25.1
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 2.0e-21 107.5 121 48.8
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.4e-19 101.3 119 45.4
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.0e-17 93.6 113 45.1
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 5.3e-14 82.8 216 28.7
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 2.0e-13 80.9 113 44.2
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.9e-12 77.0 106 43.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 7.9e-10 68.9 98 43.9
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.8e-09 67.8 58 51.7
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.8e-09 67.8 250 25.6
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 3.0e-09 67.0 59 47.5
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 4.4e-08 63.2 68 45.6
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 4.4e-08 63.2 61 52.5
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 4.4e-08 63.2 61 52.5
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 4.4e-08 63.2 196 26.5
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 1.3e-07 61.6 219 25.1
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 1.3e-07 61.6 173 27.2
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 4.8e-07 59.7 155 29.0
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 8.2e-07 58.9 232 25.0
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 2.4e-06 57.4 172 26.7
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.4e-06 57.4 166 27.7
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 5.3e-06 56.2 158 29.1


User provided reference genes

Program Settings