Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 3555.0 1833 100.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 3212.6 1839 90.7
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1624.4 1897 48.9
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1619.4 1900 48.5
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1610.9 1903 49.0
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1609.7 1877 48.6
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1568.5 1890 48.0
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1567.0 1899 48.2
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1527.7 1882 47.7
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1525.8 1898 47.2
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1521.5 1882 47.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1515.7 1893 46.3
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1514.6 1900 46.4
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1510.0 1895 46.7
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1510.0 1899 46.7
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1509.6 1892 46.7
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1508.0 1909 46.4
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1508.0 1887 45.9
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1502.3 1887 46.1
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1499.6 1899 46.5
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 0.0e+00 1499.2 1904 47.4
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1498.0 1894 46.1
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1497.3 1901 45.8
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1488.8 1901 45.6
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1485.3 1902 45.5
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1484.2 1923 46.2
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1481.8 1896 46.0
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1479.5 1887 46.0
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1479.5 1902 45.4
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1476.1 1902 45.4
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1475.7 1902 45.3
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1473.0 1896 45.7
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1468.8 1902 45.2
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1468.4 1898 45.7
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1467.6 1895 45.6
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1466.8 1892 45.7
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1464.5 1872 46.3
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1464.1 1903 46.0
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1458.7 1902 45.4
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1454.9 1897 45.7
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1451.4 1890 45.2
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1450.6 1894 45.4
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1448.7 1901 45.0
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1448.3 1791 46.6
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1444.1 1976 44.9
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1443.3 1899 45.0
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1439.9 1861 45.6
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1437.6 1881 44.6
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1437.6 1897 45.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1435.2 1898 44.6
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1431.8 1904 44.7
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1431.4 1870 44.9
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1431.0 1894 44.9
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1427.9 1894 44.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 1427.2 1884 45.4
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1426.4 1894 45.0
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1426.0 1899 44.5
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1423.3 1880 44.8
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1423.3 1908 44.2
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1421.8 1879 44.5
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1419.8 1880 44.6
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1418.7 1882 44.2
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 0.0e+00 1416.7 1907 45.0
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1416.4 1881 45.8
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1410.2 1880 44.3
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1409.0 1880 44.9
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1408.7 1980 44.5
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1406.3 1865 44.7
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1405.2 1894 44.3
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1402.9 1902 44.1
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1401.0 1889 45.0
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1401.0 1908 44.2
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1398.3 1899 44.3
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1396.7 1882 44.0
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1395.6 1871 45.1
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1395.6 1896 44.1
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1389.4 1892 43.0
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1383.6 1894 44.1
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1382.5 1898 43.9
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1382.1 1896 43.5
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 0.0e+00 1381.7 1888 43.9
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1381.7 1895 44.0
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1381.3 1890 44.1
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1377.8 1889 44.0
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1377.1 1894 44.5
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1376.3 1875 44.3
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1374.0 1912 43.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1373.2 1881 43.8
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 0.0e+00 1370.9 1896 43.8
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 0.0e+00 1365.1 1912 43.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 0.0e+00 1364.0 1891 43.9
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1363.6 1887 43.9
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 0.0e+00 1358.6 1898 43.2
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1356.7 1888 43.8
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1356.3 1889 42.6
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1356.3 1880 43.9
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1352.8 1902 43.3
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 0.0e+00 1351.7 1909 43.2
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1350.1 1900 43.1
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1348.2 1901 42.8
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1346.6 1889 42.6
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1346.6 1889 42.6
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 0.0e+00 1345.5 1907 42.4
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1345.1 1889 42.7
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1345.1 1889 42.7
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1343.2 1889 42.7
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 0.0e+00 1340.9 1906 42.4
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 0.0e+00 1338.2 1907 42.3
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1336.6 1895 42.2
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 0.0e+00 1335.9 1908 42.5
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 0.0e+00 1332.8 1635 46.5
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 0.0e+00 1328.9 1894 43.5
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1325.8 1628 46.7
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1323.9 1901 42.2
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 0.0e+00 1321.6 1899 42.1
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1310.0 1890 43.1
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1291.9 1862 42.9
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1288.5 1887 41.9
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1287.7 1884 42.4
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1278.8 1909 42.1
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1278.8 1909 42.1
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1278.8 1907 42.0
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1276.9 1911 41.7
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1276.9 1886 41.7
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 0.0e+00 1275.4 1898 42.1
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1275.0 1910 41.7
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1264.2 1747 43.4
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1261.9 1834 43.2
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 1254.2 1864 42.6
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1251.9 1844 42.0
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1248.4 1863 40.7
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1248.4 1879 41.4
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 1228.0 1904 40.3
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 1215.3 1901 39.7
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 0.0e+00 1210.7 1491 46.8
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 0.0e+00 1152.9 1953 38.5
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 1119.8 1750 40.1
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.8e-309 1066.2 738 74.3
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 7.3e-294 1015.0 1946 37.6
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 6.8e-292 1008.4 1959 36.9
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.0e-279 966.5 1938 35.8
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.2e-265 919.8 1921 35.6
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 3.9e-247 859.8 1102 46.4
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 3.3e-246 856.7 1873 35.0
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 7.4e-238 828.9 1322 39.6
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 7.7e-227 792.3 500 81.0
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 9.4e-225 785.4 928 49.0
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 5.5e-209 733.0 683 59.3
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 7.6e-174 616.3 940 41.8
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 3.9e-170 604.0 881 43.2
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 5.7e-137 493.8 1280 31.4
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 1.6e-136 492.3 748 41.4
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 7.7e-126 456.8 2075 26.7
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 4.4e-105 387.9 766 35.8
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.6e-51 209.9 474 33.5
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.0e-45 190.7 272 43.4
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 1.5e-44 186.8 224 51.8
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 1.3e-37 163.7 316 35.8
Psat4g169200 Pisum sativum HOM05D003460 ORTHO05D004277 9.3e-31 141.0 308 33.4
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 1.4e-26 127.1 278 35.6
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 4.0e-26 125.6 306 29.4
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 7.1e-23 114.8 274 33.9
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 1.6e-22 113.6 114 50.9
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 2.1e-22 113.2 133 45.9
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 2.4e-18 99.8 137 47.4
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 5.0e-16 92.0 104 51.9
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 1.4e-15 90.5 148 40.5
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 3.6e-14 85.9 81 56.8
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 5.9e-09 68.6 122 40.2
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 7.7e-09 68.2 108 41.7
TPR.G30982 Trifolium pratense HOM05D003460 ORTHO05D004277 1.0e-08 67.8 62 58.1
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 6.5e-08 65.1 120 33.3
HPP92_028274 Vanilla planifolia HOM05D003460 ORTHO05D030575 1.4e-07 63.9 58 56.9
Dinv43814 Davidia involucrata HOM05D003460 ORTHO05D013366 7.2e-07 61.6 57 59.6
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 4.6e-06 58.9 68 50.0
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 6.1e-06 58.5 120 37.5


User provided reference genes

Program Settings