Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 4.4e-228 794.3 399 100.0
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 2.1e-81 307.0 350 42.9
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 1.5e-79 300.8 341 44.9
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.0e-79 300.4 337 43.3
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 4.4e-79 299.3 337 43.3
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 7.6e-79 298.5 334 44.0
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.9e-78 296.6 337 42.4
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 3.8e-78 296.2 345 42.6
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 4.9e-78 295.8 356 39.6
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.4e-77 294.3 339 41.6
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.9e-77 293.9 352 42.3
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.9e-77 293.9 351 42.7
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 9.3e-77 291.6 353 42.8
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 3.5e-76 289.7 359 40.9
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.5e-76 289.7 362 41.7
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 3.9e-75 286.2 346 41.6
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 6.6e-75 285.4 327 45.0
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 2.8e-73 280.0 367 39.5
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 2.8e-73 280.0 351 41.3
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.8e-73 279.3 351 43.0
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.1e-72 278.1 351 42.7
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 3.1e-72 276.6 327 42.8
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 4.0e-72 276.2 351 40.5
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 6.9e-72 275.4 363 40.2
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 6.9e-72 275.4 365 39.5
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 9.0e-72 275.0 362 41.2
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 5.8e-71 272.3 341 40.2
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.3e-70 271.2 433 36.3
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.7e-70 270.8 391 36.8
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 2.9e-70 270.0 343 42.3
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 6.4e-70 268.9 338 41.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 1.4e-69 267.7 340 41.5
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.4e-69 266.9 350 39.7
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 3.2e-69 266.5 331 42.6
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 5.5e-69 265.8 329 40.1
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 5.5e-69 265.8 365 38.1
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 7.1e-69 265.4 342 39.8
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 1.6e-68 264.2 355 38.9
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 2.1e-68 263.8 352 39.5
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.1e-68 263.8 353 38.2
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 4.6e-68 262.7 339 40.1
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.0e-67 261.5 337 39.8
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.0e-67 261.5 337 39.8
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 1.0e-67 261.5 340 39.1
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.3e-67 261.2 350 38.9
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.8e-67 260.8 345 38.3
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 2.3e-67 260.4 349 39.8
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 2.3e-67 260.4 367 38.1
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 5.1e-67 259.2 350 38.6
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.1e-67 259.2 365 37.8
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 5.1e-67 259.2 362 38.7
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 6.7e-67 258.8 350 38.9
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 3.3e-66 256.5 349 40.1
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 4.3e-66 256.1 350 37.7
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 4.3e-66 256.1 362 39.8
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 5.6e-66 255.8 340 38.5
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 9.6e-66 255.0 341 39.3
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 9.6e-66 255.0 360 38.6
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.3e-65 254.6 334 41.6
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.1e-65 253.8 332 41.3
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.1e-65 253.8 350 38.0
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.7e-65 253.1 371 38.0
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 4.8e-65 252.7 366 38.8
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 4.8e-65 252.7 332 41.3
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 6.2e-65 252.3 350 38.6
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 6.2e-65 252.3 360 38.1
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.4e-64 251.1 355 37.2
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 1.8e-64 250.8 339 38.9
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 4.0e-64 249.6 356 37.9
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 4.0e-64 249.6 351 39.3
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 4.0e-64 249.6 347 38.0
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 5.3e-64 249.2 326 37.7
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 6.9e-64 248.8 347 39.8
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.2e-63 248.1 365 37.8
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.5e-63 247.7 358 37.4
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.3e-62 244.6 304 40.8
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.3e-62 244.6 335 37.3
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.7e-62 244.2 335 40.3
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 3.8e-62 243.0 335 37.3
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 4.2e-61 239.6 354 36.4
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 7.1e-61 238.8 347 38.6
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.7e-60 236.9 356 35.4
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.7e-59 231.9 281 38.8
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.9e-58 230.7 343 37.0
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 2.8e-57 226.9 358 36.9
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.4e-55 219.9 367 35.7
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 2.5e-53 213.8 391 34.5
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 3.7e-49 199.9 310 36.5
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 4.1e-48 196.4 476 28.6
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 2.3e-43 180.6 237 38.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 5.1e-43 179.5 303 33.3
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 5.7e-42 176.0 281 34.5
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 9.7e-42 175.3 353 34.0
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 6.3e-41 172.6 291 34.7
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.0e-39 167.5 304 36.5
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 3.8e-38 163.3 257 32.7
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.1e-36 157.5 166 47.6
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 5.1e-35 152.9 169 43.2
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-34 151.8 184 41.8
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 1.6e-28 131.3 123 60.2
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.7e-28 130.6 111 53.2
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 2.3e-27 127.5 227 29.5
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 5.2e-27 126.3 270 30.0
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-25 121.7 252 28.6
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.1e-24 117.1 116 45.7
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 9.4e-21 105.5 227 29.1
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 8.0e-20 102.4 224 26.8
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 7.5e-18 95.9 191 28.3
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 5.9e-15 86.3 117 40.2
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.5e-13 81.6 135 28.1
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 7.5e-10 69.3 160 26.9


User provided reference genes

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