Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.5e-153 545.4 284 100.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 3.8e-133 478.4 284 89.4
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.7e-112 408.7 301 76.4
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.8e-106 389.8 300 74.0
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.3e-106 389.4 303 74.6
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.3e-104 381.3 303 70.6
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 2.3e-93 346.3 296 65.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 5.6e-92 341.7 313 63.9
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 6.8e-90 334.7 334 59.3
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 3.7e-88 328.9 296 62.5
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 4.6e-86 322.0 296 61.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.0e-86 321.6 298 62.1
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.0e-81 306.6 305 60.3
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 4.4e-81 305.4 305 60.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.7e-80 303.5 338 55.9
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 4.0e-74 282.3 298 58.1
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 6.8e-66 255.0 303 51.8
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.9e-63 246.9 302 47.4
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 4.2e-63 245.7 302 48.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.7e-62 243.0 325 47.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 1.3e-61 240.7 312 48.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 8.7e-61 238.0 298 50.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.3e-60 235.7 312 45.5
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 4.3e-60 235.7 314 46.2
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.6e-60 235.3 314 45.2
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.1e-59 233.4 317 45.4
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.8e-58 230.3 310 45.5
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.3e-58 228.8 309 45.0
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 5.3e-58 228.8 309 45.0
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 6.9e-58 228.4 310 45.5
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.6e-57 226.5 309 45.0
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.6e-57 226.5 331 44.7
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 5.8e-57 225.3 309 45.3
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 7.6e-57 224.9 324 44.4
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.8e-56 222.6 305 44.3
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.9e-56 222.2 316 44.3
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 3.2e-55 219.5 300 44.0
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 5.4e-55 218.8 302 46.4
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 7.1e-55 218.4 307 45.0
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.6e-54 215.7 316 42.4
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.3e-53 213.4 311 43.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 3.0e-53 213.0 312 44.2
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 3.0e-53 213.0 304 42.8
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.9e-53 212.6 314 42.4
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.9e-53 212.6 314 42.4
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-53 212.6 302 45.7
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 5.1e-53 212.2 283 46.6
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.1e-53 212.2 282 45.4
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.6e-53 211.8 283 45.6
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.5e-52 210.7 353 38.8
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.5e-52 210.7 224 58.0
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.9e-52 210.3 289 45.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.3e-52 209.5 312 42.0
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 7.4e-52 208.4 296 42.9
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 2.8e-51 206.5 302 42.4
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-50 204.5 298 42.3
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 3.1e-50 203.0 285 43.9
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-50 203.0 319 41.4
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.0e-50 202.6 314 41.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.2e-49 201.1 316 41.8
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.0e-49 200.3 300 42.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.0e-49 200.3 283 43.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.6e-49 199.9 295 42.0
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.5e-49 199.1 293 43.0
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 4.5e-49 199.1 311 40.5
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.7e-48 197.2 305 42.3
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.7e-48 197.2 300 44.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.7e-48 197.2 293 43.3
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.9e-48 196.4 300 43.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.9e-48 196.4 301 41.2
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 6.4e-48 195.3 325 40.9
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.1e-47 194.5 296 42.9
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.4e-47 194.1 300 41.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.2e-46 191.0 300 41.7
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.6e-46 190.7 312 42.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.1e-46 190.3 316 38.9
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 2.7e-46 189.9 270 42.6
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.5e-46 189.5 317 40.7
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 3.5e-46 189.5 325 40.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 4.6e-46 189.1 277 41.9
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.3e-45 186.8 289 42.6
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 6.7e-45 185.3 323 38.1
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.9e-44 183.7 305 39.7
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.5e-44 183.3 281 41.3
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 7.4e-44 181.8 290 43.1
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-43 181.0 301 39.5
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.1e-43 180.3 286 39.9
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 2.8e-43 179.9 298 43.3
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.4e-42 176.8 313 38.3
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 6.9e-42 175.3 296 37.8
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.0e-41 173.7 309 37.9
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.5e-41 172.6 311 39.5
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.1e-39 167.9 376 34.3
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 5.5e-39 165.6 283 39.2
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 5.5e-39 165.6 283 39.2
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 5.5e-39 165.6 342 34.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 7.1e-39 165.2 301 39.5
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 9.3e-39 164.9 283 39.6
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 2.7e-38 163.3 354 33.3
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 3.5e-38 162.9 287 41.1
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.8e-37 160.6 327 35.2
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.3e-37 160.2 284 38.4
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 3.0e-37 159.8 322 36.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.1e-37 159.1 296 37.2
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.9e-36 157.1 295 37.3
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.3e-36 156.4 292 39.0
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.1e-35 153.7 290 40.0
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.8e-34 150.6 290 37.9
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.0e-33 147.1 307 35.5
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 8.5e-32 141.7 283 35.3
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.2e-31 139.8 306 35.3
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.6e-30 136.0 178 47.2
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 4.6e-30 136.0 403 29.5
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.3e-29 134.4 191 46.6
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.3e-28 129.4 230 40.9
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.8e-26 124.0 211 40.3
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.9e-25 119.0 277 31.4
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 4.2e-23 112.8 101 57.4
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.6e-22 110.9 227 35.2
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.7e-22 110.2 154 38.3
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.8e-21 107.5 166 42.2
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.9e-21 106.3 167 40.1
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 7.4e-20 102.1 88 59.1
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.7e-19 100.9 215 34.4
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.7e-19 100.9 338 27.5
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.8e-18 97.4 256 27.7
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 3.1e-18 96.7 102 47.1
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.2e-17 94.7 70 67.1
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.9e-16 90.1 144 40.3
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 5.0e-16 89.4 312 28.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 6.5e-16 89.0 148 33.8
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.0e-13 81.6 340 24.4
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-13 80.5 205 32.2
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-13 79.7 56 67.9
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.3e-12 76.6 57 64.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.8e-10 70.9 280 23.9
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 7.0e-10 68.9 313 24.0
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-09 68.2 175 36.0
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.6e-09 67.0 245 28.2
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.0e-08 65.1 234 28.2
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 2.2e-08 63.9 75 44.0
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 1.1e-07 61.6 81 44.4
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 5.5e-07 59.3 70 52.9


User provided reference genes

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