Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 0.0e+00 1150.2 599 100.0
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 0.0e+00 1117.8 599 97.2
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 0.0e+00 1105.1 599 95.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 0.0e+00 1102.0 599 95.3
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 3.7e-295 1017.7 602 87.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 6.3e-295 1016.9 602 88.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.1e-290 1001.9 601 87.5
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-290 1001.5 601 86.7
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.0e-289 999.6 601 87.0
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.8e-289 998.8 602 86.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 3.9e-289 997.7 601 87.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.7e-289 996.9 602 86.5
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.2e-287 991.9 600 86.7
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 3.1e-286 988.0 603 84.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 4.7e-282 974.2 601 84.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.6e-274 949.1 599 83.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.4e-272 941.0 576 82.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 7.5e-272 940.3 587 82.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.7e-271 939.1 602 82.7
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-268 929.9 589 81.7
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.3e-268 929.5 598 78.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 3.8e-268 927.9 598 78.8
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.0e-268 927.5 593 80.3
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.0e-268 927.5 589 81.3
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.5e-268 926.8 587 80.6
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.5e-267 926.0 589 81.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.2e-267 924.5 599 79.1
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 7.2e-267 923.7 592 79.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.2e-266 922.9 589 81.2
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.6e-266 922.5 581 80.4
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.7e-266 921.0 584 80.1
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 5.2e-265 917.5 587 80.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 8.8e-265 916.8 599 78.5
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.5e-264 916.0 585 80.2
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 5.7e-264 914.1 597 78.4
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.2e-263 912.1 599 78.1
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.7e-263 911.4 591 79.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.4e-262 909.4 599 78.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.1e-262 908.3 573 81.7
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 9.1e-262 906.7 587 78.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 9.1e-262 906.7 596 79.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.8e-260 901.4 565 81.2
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.9e-259 899.0 593 77.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.5e-259 898.7 563 81.2
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 9.5e-259 896.7 573 80.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 8.0e-258 893.6 692 68.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.3e-257 892.1 589 78.1
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.0e-257 891.3 589 78.1
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.8e-256 886.7 597 77.1
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.3e-255 886.3 595 76.5
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-255 886.3 568 79.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.3e-255 886.3 597 77.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 4.1e-254 881.3 574 79.6
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.7e-252 875.9 595 75.8
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.9e-252 875.2 593 75.0
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 6.6e-252 874.0 595 75.3
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 6.6e-252 874.0 593 75.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 8.6e-252 873.6 593 75.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.5e-251 872.1 582 75.9
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 4.3e-251 871.3 588 75.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.6e-251 870.9 594 75.3
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 5.6e-251 870.9 595 75.1
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.3e-251 870.5 595 75.3
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.2e-250 869.8 593 74.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.7e-250 867.8 593 74.4
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.4e-249 866.3 588 75.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.3e-249 865.5 595 75.8
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 6.8e-249 864.0 594 74.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.2e-248 863.2 693 66.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.0e-248 862.4 593 75.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.6e-248 862.1 637 71.1
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.4e-248 861.7 594 73.9
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 4.4e-248 861.3 595 73.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-247 859.4 591 73.9
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 8.3e-247 857.1 593 73.5
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.4e-246 856.3 579 75.3
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 9.2e-246 853.6 579 75.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 3.5e-245 851.7 595 73.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 4.6e-245 851.3 508 84.1
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 7.8e-245 850.5 589 73.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.7e-244 849.4 567 76.2
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 8.6e-244 847.0 587 74.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 8.6e-244 847.0 560 77.9
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-243 845.9 579 75.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.3e-243 844.7 595 73.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 5.6e-243 844.3 587 74.6
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.6e-242 841.6 566 76.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.7e-242 841.3 572 76.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.2e-242 840.9 569 76.4
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.1e-241 838.6 589 73.9
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.1e-241 838.6 565 76.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.5e-240 836.3 595 72.1
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.4e-240 835.1 588 74.0
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 5.8e-240 834.3 588 73.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.8e-240 833.6 597 73.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.4e-239 830.9 598 73.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.3e-239 830.5 588 73.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.6e-237 826.2 600 71.2
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-236 823.2 567 73.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.3e-236 823.2 616 70.3
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 5.1e-236 821.2 600 70.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.6e-236 820.8 588 73.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.1e-234 815.8 591 71.1
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.1e-234 815.8 603 70.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 4.7e-234 814.7 587 70.5
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 4.7e-234 814.7 571 75.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.1e-233 812.0 571 75.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.2e-231 805.8 593 71.7
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 6.4e-231 804.3 511 78.9
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 8.3e-231 803.9 571 74.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.7e-226 788.1 588 70.9
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 3.4e-224 781.9 596 68.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.4e-217 760.0 572 69.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 9.9e-216 753.8 566 70.7
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 5.4e-214 748.0 522 73.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.4e-214 748.0 589 66.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.6e-211 738.0 588 67.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 7.9e-205 717.6 589 65.2
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.3e-204 716.1 583 66.0
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.2e-199 699.5 522 69.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.1e-187 660.6 501 68.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.2e-183 646.4 448 75.4
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-180 637.1 433 76.7
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.9e-177 624.8 478 66.9
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 4.7e-173 612.1 507 66.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 9.4e-166 587.8 380 80.5
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 9.7e-163 577.8 534 60.1
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.4e-155 552.4 578 57.4
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 4.1e-153 545.8 372 73.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.5e-142 510.8 519 52.8
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.0e-135 485.7 400 66.2
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 9.8e-131 471.5 328 74.1
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.8e-117 426.8 309 72.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.9e-116 421.8 252 85.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.1e-112 410.6 514 47.9
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.9e-98 362.8 229 80.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 5.4e-97 359.4 567 41.1
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.7e-90 337.8 229 75.1
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.5e-78 298.1 202 75.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-74 285.4 210 66.2
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.2e-66 257.7 260 53.1
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 9.1e-60 235.7 318 41.8
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 4.1e-52 210.3 132 81.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.0e-47 195.7 266 45.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.7e-40 171.0 117 71.8
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.2e-31 140.2 137 57.7
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 7.7e-27 126.3 187 42.8
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.0e-26 125.9 101 63.4
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.3e-23 114.8 101 61.4
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.5e-22 112.1 207 38.6
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.1e-17 95.9 50 84.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 2.6e-14 84.7 81 55.6
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.4e-14 84.0 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.0e-12 76.6 60 63.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 4.3e-09 67.4 74 48.6
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 5.6e-09 67.0 74 48.6
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.6e-08 64.3 74 47.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.6e-08 64.3 57 52.6
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.5e-06 58.9 84 45.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-06 58.9 250 28.4
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.0e-06 58.5 51 43.1
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 3.4e-06 57.8 51 66.7


User provided reference genes

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