Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.3e-296 1022.3 532 100.0
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.1e-290 1002.7 532 96.8
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.2e-276 956.1 512 94.7
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.9e-271 938.7 511 93.9
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 3.0e-248 861.7 510 87.5
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 5.1e-240 834.3 509 84.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.3e-239 831.2 518 83.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-237 826.6 513 84.8
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 5.3e-237 824.3 510 84.5
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.9e-236 820.8 515 81.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-231 806.2 531 79.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 5.7e-231 804.3 530 79.6
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 8.5e-227 790.4 509 80.7
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.1e-217 759.2 520 75.2
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 6.1e-217 757.7 516 75.8
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.5e-215 753.1 517 75.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.3e-215 751.9 517 76.0
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.3e-215 751.9 517 76.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 3.7e-214 748.4 533 73.7
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.8e-214 748.0 517 75.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 6.5e-211 737.6 521 74.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.9e-210 736.1 520 73.3
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 7.2e-210 734.2 515 74.2
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.2e-210 734.2 515 74.2
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.7e-209 732.3 523 72.7
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 8.0e-209 730.7 515 73.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-207 726.1 515 73.6
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.8e-206 722.2 507 73.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.7e-206 721.8 534 72.5
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.8e-206 721.5 519 72.4
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.8e-206 721.5 514 74.3
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 8.3e-206 720.7 511 72.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.4e-205 719.9 507 73.8
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.1e-205 718.4 516 72.1
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.1e-205 718.4 507 73.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.3e-205 718.0 522 71.6
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 5.3e-205 718.0 522 71.5
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.8e-203 711.8 516 72.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.9e-202 709.5 518 72.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.0e-200 702.2 527 71.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 5.2e-200 701.4 523 69.2
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.2e-198 696.0 585 65.0
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.1e-197 692.2 542 67.9
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 5.4e-197 691.4 527 70.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.6e-196 689.9 521 68.5
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 5.0e-195 684.9 522 68.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 9.8e-191 670.6 540 66.3
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.3e-190 667.9 525 67.6
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.8e-189 666.4 505 70.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.2e-189 665.6 532 66.7
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.7e-187 659.8 503 68.6
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.4e-181 639.4 527 66.2
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 4.1e-181 638.6 538 63.9
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.6e-180 635.2 517 67.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.0e-180 634.8 515 64.9
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.0e-179 632.5 431 74.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.6e-175 619.4 552 62.7
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 5.8e-175 618.2 516 62.6
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 7.1e-173 611.3 566 59.4
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 8.6e-171 604.4 509 62.5
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.5e-170 603.6 506 63.0
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.7e-169 598.6 518 63.3
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-167 594.0 507 61.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 3.7e-166 589.0 525 60.6
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.4e-165 587.0 523 61.6
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.0e-160 568.9 356 81.7
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.6e-159 564.7 485 63.1
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.6e-159 564.7 396 73.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.4e-157 559.7 527 59.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 5.1e-155 552.0 510 59.8
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.0e-152 542.3 514 58.8
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-146 523.9 500 58.0
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 5.6e-146 521.9 500 58.0
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.3e-145 520.8 407 67.1
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.8e-143 511.9 450 59.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-141 506.9 423 65.2
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.3e-139 500.7 549 54.1
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 1.7e-134 483.8 339 74.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-131 473.8 343 71.1
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-130 470.7 391 65.5
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.4e-128 463.4 496 52.4
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.0e-127 460.3 502 54.6
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.8e-97 359.4 406 53.9
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-92 342.8 487 46.0
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 8.8e-91 338.6 466 44.2
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-79 301.2 454 40.3
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-78 298.1 434 41.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-77 293.9 459 40.7
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 5.6e-77 292.7 202 73.3
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.3e-77 292.4 481 39.5
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-76 291.6 455 40.9
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.0e-76 288.9 460 41.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-74 283.9 508 40.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 3.4e-74 283.5 455 38.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.8e-74 282.0 449 40.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.9e-73 279.6 447 41.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.9e-73 279.6 443 42.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-72 278.5 518 38.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.8e-72 277.7 460 39.3
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.0e-72 275.8 272 58.8
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.2e-72 275.4 425 39.8
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-71 275.0 492 40.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.7e-71 273.9 431 40.4
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.7e-71 273.9 446 40.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.6e-68 264.6 442 39.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.6e-68 263.5 376 43.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.8e-67 261.2 454 39.6
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 6.8e-67 259.2 447 39.1
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-66 258.1 467 37.7
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-66 257.7 447 38.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 4.4e-66 256.5 495 36.2
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-65 254.6 423 39.5
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 3.7e-65 253.4 423 39.5
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.4e-65 252.7 445 39.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-64 251.1 446 39.5
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.0e-64 249.2 438 38.1
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-63 247.7 439 38.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 4.6e-63 246.5 439 38.3
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 6.0e-63 246.1 439 38.3
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.3e-62 244.2 429 38.5
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.9e-61 241.1 440 38.0
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 5.2e-59 233.0 410 38.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 4.4e-58 229.9 422 39.3
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 7.5e-58 229.2 167 69.5
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 8.3e-57 225.7 481 35.6
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 6.0e-55 219.5 440 34.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-54 217.6 394 38.8
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 3.9e-54 216.9 375 37.3
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.6e-54 216.1 397 37.5
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.2e-52 211.8 378 34.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.4e-48 197.6 414 35.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.7e-44 183.3 292 40.4
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-43 182.2 150 60.7
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 3.1e-43 180.6 92 93.5
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 4.0e-43 180.3 403 32.5
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.9e-41 173.3 393 33.1
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.0e-38 164.1 269 39.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 9.6e-37 159.1 218 44.5
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-35 155.6 190 50.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-35 153.7 275 39.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.2e-34 152.1 238 39.1
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 3.2e-32 144.1 108 63.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-28 131.7 189 46.6
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-27 129.0 264 36.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 2.9e-25 120.9 161 47.8
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.9e-24 118.2 184 39.7
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.1e-24 116.3 143 50.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 2.1e-23 114.8 246 35.4
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 7.9e-23 112.8 58 96.6
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 3.9e-22 110.5 82 76.8
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.7e-22 109.4 77 76.6
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.9e-21 108.2 172 39.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.1e-20 104.8 143 44.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.2e-20 103.2 109 54.1
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-18 99.0 339 28.9
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 7.6e-18 96.3 311 30.5
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-16 92.4 65 63.1
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.1e-16 92.4 144 41.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.1e-16 89.7 116 38.8
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 9.3e-16 89.4 109 52.3
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.9e-15 86.3 61 63.9
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.0e-14 84.3 301 26.6
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.9e-13 81.6 167 37.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.5e-13 81.3 100 42.0
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.3e-13 80.9 59 64.4
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.6e-13 79.3 87 51.7
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.6e-13 79.3 115 39.1
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 2.8e-12 77.8 56 66.1
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 4.8e-12 77.0 152 39.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 6.3e-12 76.6 80 52.5
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.1e-11 74.3 209 32.1
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 3.1e-11 74.3 123 37.4
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 6.9e-11 73.2 60 60.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.2e-10 72.4 61 60.7
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.2e-10 72.4 82 51.2
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 7.6e-10 69.7 178 24.7
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 2.2e-09 68.2 92 45.7
Ca_23751_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 2.9e-09 67.8 48 75.0
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 2.9e-09 67.8 48 75.0
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 1.1e-08 65.9 42 76.2
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.5e-08 63.5 67 52.2
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 5.5e-08 63.5 129 31.8
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 9.3e-08 62.8 85 47.1
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-07 62.0 83 44.6


User provided reference genes

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