Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 0.0e+00 1414.8 704 100.0
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 0.0e+00 1340.5 702 93.9
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 0.0e+00 1312.7 702 91.3
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 0.0e+00 1220.3 702 84.6
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 0.0e+00 1212.6 702 83.0
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 0.0e+00 1192.9 705 82.8
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 0.0e+00 1192.9 730 79.9
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 0.0e+00 1187.6 709 81.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 0.0e+00 1156.0 702 80.8
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 0.0e+00 1156.0 704 82.0
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 0.0e+00 1124.0 702 79.3
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 2.7e-289 998.4 706 68.8
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 1.8e-288 995.7 680 72.2
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.1e-287 993.0 707 68.9
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 3.7e-286 988.0 707 67.3
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 3.1e-285 984.9 707 67.6
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.2e-284 983.0 708 67.5
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 2.2e-283 978.8 706 67.1
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.9e-283 978.4 733 65.9
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 3.8e-283 978.0 707 68.0
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 3.8e-283 978.0 708 66.9
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.6e-281 972.6 682 69.6
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.1e-281 972.2 707 68.2
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.0e-280 969.9 710 68.3
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.8e-278 961.8 684 69.6
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 5.3e-277 957.6 707 66.8
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.6e-276 955.3 771 62.0
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 3.8e-275 951.4 708 66.8
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 6.1e-273 944.1 749 64.1
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 1.4e-272 943.0 703 66.0
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 3.0e-272 941.8 703 65.7
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 5.7e-271 937.6 689 66.8
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.2e-270 935.6 698 66.6
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 5.3e-269 931.0 702 65.5
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 6.9e-269 930.6 712 65.6
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 5.9e-268 927.5 712 64.2
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 3.8e-267 924.9 664 67.2
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 8.5e-267 923.7 712 63.9
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 5.5e-266 921.0 705 64.0
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 7.2e-266 920.6 709 65.7
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.0e-264 916.8 708 62.3
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 1.0e-264 916.8 699 65.1
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 1.4e-264 916.4 707 64.6
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.2e-264 914.4 709 62.8
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 6.7e-264 914.1 710 63.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.5e-263 912.9 708 62.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 2.6e-263 912.1 700 64.6
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 3.3e-263 911.8 708 61.9
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 3.3e-263 911.8 705 63.3
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 4.4e-263 911.4 709 62.6
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 4.4e-263 911.4 719 63.3
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 5.7e-263 911.0 708 61.7
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 5.7e-263 911.0 707 61.2
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 5.7e-263 911.0 686 64.7
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 7.4e-263 910.6 708 62.1
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.3e-262 909.8 708 62.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 2.2e-262 909.1 685 64.8
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.7e-262 908.3 707 63.9
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 3.1e-261 905.2 708 62.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 4.1e-261 904.8 664 66.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.9e-260 901.0 693 63.1
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.0e-259 900.2 708 61.6
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 1.3e-259 899.8 652 66.6
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 2.2e-259 899.0 708 62.0
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.1e-258 896.7 679 64.2
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 2.5e-258 895.6 708 61.0
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.1e-257 892.5 680 65.6
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.8e-256 889.4 707 60.8
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 7.5e-255 884.0 727 61.1
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 9.7e-255 883.6 731 60.5
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.8e-254 881.3 727 60.9
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 6.3e-254 880.9 709 62.9
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 5.9e-252 874.4 612 69.0
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 1.8e-245 852.8 711 60.5
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 3.5e-244 848.6 679 62.4
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.5e-242 843.2 650 64.0
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 1.9e-242 842.8 710 59.3
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 9.8e-239 830.5 667 60.0
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.8e-237 826.2 677 60.9
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 9.2e-237 823.9 705 59.3
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 8.0e-233 810.8 690 59.7
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.5e-231 806.6 753 57.0
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 9.2e-229 797.3 428 90.4
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.5e-226 790.0 981 46.2
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 6.2e-225 784.6 689 58.2
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 6.8e-224 781.2 617 64.0
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 7.0e-221 771.2 536 68.8
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 2.3e-219 766.1 524 71.4
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 1.4e-216 756.9 707 56.3
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 8.9e-216 754.2 497 73.4
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 4.1e-213 745.3 629 60.9
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.1e-210 737.3 568 63.0
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.5e-210 736.9 512 69.7
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 2.4e-208 729.6 677 53.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 4.0e-192 675.6 719 51.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.2e-191 674.1 577 57.7
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.4e-184 650.6 640 52.3
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.5e-175 620.5 669 47.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.6e-175 619.8 663 48.0
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 8.2e-161 571.6 383 74.4
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 4.5e-151 539.3 324 79.9
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.7e-150 537.3 405 63.0
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.7e-145 519.6 366 68.6
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.8e-139 500.7 401 60.3
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.1e-132 477.2 518 46.5
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 4.9e-121 439.5 393 57.3
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 9.8e-114 415.2 438 47.3
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 5.4e-104 382.9 319 58.6
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 7.8e-103 379.0 290 64.1
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.7e-94 351.3 356 53.4
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.9e-94 350.1 273 65.2
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 1.1e-93 348.6 602 37.7
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.5e-90 338.2 279 59.9
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 7.1e-80 302.8 237 59.9
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 6.6e-78 296.2 233 63.1
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.1e-76 291.2 283 55.8
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.6e-68 265.0 655 31.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-68 263.8 385 37.9
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-60 238.8 428 34.6
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.1e-56 225.7 565 28.5
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-41 175.6 353 36.8
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 1.8e-38 165.2 119 66.4
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.0e-37 161.8 213 44.1
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.7e-36 158.7 273 35.2
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.3e-36 156.8 221 42.1
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 4.1e-35 154.1 112 70.5
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 9.1e-35 152.9 125 60.8
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.5e-34 151.0 218 42.2
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.1e-32 146.0 103 68.9
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.3e-22 111.7 125 49.6
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 7.5e-21 106.7 73 67.1
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.8e-20 104.8 431 24.4
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.8e-19 102.1 86 48.8
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.5e-16 91.7 112 40.2
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.2e-16 90.9 89 47.2
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 8.0e-15 86.7 400 23.2
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.8e-14 85.5 163 39.9
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.3e-14 85.1 64 60.9
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.0e-14 84.7 46 76.1
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.2e-14 84.0 65 60.0
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 6.8e-14 83.6 58 67.2
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 62 61.3
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 46 71.7
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.6e-10 72.4 58 53.4
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 5.0e-09 67.4 49 71.4
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 4.7e-07 60.8 42 64.3
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 3.0e-06 58.2 206 28.2
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 4.0e-06 57.8 47 66.0
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 4.0e-06 57.8 223 26.5


User provided reference genes

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