Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 1.1e-130 469.9 234 100.0
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 5.4e-117 424.5 234 90.6
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 7.5e-103 377.5 237 81.9
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 9.0e-72 274.2 241 62.7
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 4.9e-70 268.5 239 60.7
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 6.0e-68 261.5 234 60.3
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 6.0e-68 261.5 232 61.2
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 2.3e-67 259.6 234 62.0
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.6e-60 236.9 239 55.6
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 2.1e-57 226.5 268 51.9
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.8e-57 225.3 244 54.1
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 4.5e-55 218.8 247 51.0
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 7.6e-55 218.0 246 52.0
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 5.0e-54 215.3 247 51.8
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 1.4e-53 213.8 247 51.8
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 7.9e-52 208.0 246 50.4
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 3.0e-51 206.1 248 50.0
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 8.7e-51 204.5 247 49.8
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 2.8e-49 199.5 248 48.8
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 5.3e-48 195.3 241 49.4
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 6.9e-48 194.9 283 43.8
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.2e-47 194.1 257 49.0
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 1.3e-46 190.7 243 50.6
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 1.3e-46 190.7 252 47.2
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 2.2e-46 189.9 242 46.3
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 3.8e-46 189.1 226 49.1
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 1.4e-45 187.2 251 46.2
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.4e-45 187.2 254 44.9
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 2.5e-45 186.4 240 45.8
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 7.2e-45 184.9 249 46.2
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 9.4e-45 184.5 244 46.7
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 9.4e-45 184.5 240 45.8
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 3.6e-44 182.6 250 46.0
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 6.1e-44 181.8 255 45.1
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 7.9e-44 181.4 252 45.6
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 7.9e-44 181.4 224 48.7
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 7.9e-44 181.4 224 48.7
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.8e-43 180.3 256 43.8
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 3.0e-43 179.5 246 46.3
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 6.7e-43 178.3 254 44.5
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 6.7e-43 178.3 246 43.5
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 8.8e-43 177.9 214 47.2
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.5e-42 177.2 254 44.9
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 2.0e-42 176.8 256 41.8
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 3.3e-42 176.0 225 45.3
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 4.4e-42 175.6 244 45.5
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 5.7e-42 175.3 256 44.5
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 7.4e-42 174.9 221 44.8
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.2e-41 173.3 257 44.7
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 3.7e-41 172.6 257 44.7
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 1.8e-40 170.2 259 45.9
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 1.5e-39 167.2 246 45.5
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 5.9e-39 165.2 260 43.8
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 7.7e-39 164.9 251 41.8
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 1.3e-38 164.1 240 44.2
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 3.8e-38 162.5 254 41.3
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 6.5e-38 161.8 180 50.6
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 1.9e-37 160.2 269 41.6
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 4.2e-37 159.1 246 43.9
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 4.2e-37 159.1 243 43.2
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 9.4e-37 157.9 249 40.2
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 1.2e-36 157.5 243 42.8
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 3.6e-36 156.0 243 42.8
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 7.9e-36 154.8 186 47.8
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 3.9e-35 152.5 246 41.1
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 5.2e-35 152.1 241 41.9
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 4.4e-34 149.1 239 42.7
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 4.8e-33 145.6 145 53.8
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 8.2e-33 144.8 246 40.2
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 4.1e-32 142.5 147 57.1
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 2.6e-31 139.8 197 44.2
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 1.0e-30 137.9 219 40.6
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 3.8e-30 136.0 250 41.6
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.6e-28 130.6 213 39.0
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 2.1e-28 130.2 190 43.7
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 2.3e-27 126.7 214 38.8
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 3.0e-27 126.3 209 41.6
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 4.0e-27 125.9 230 37.8
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 8.8e-27 124.8 252 38.5
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.2e-26 124.4 113 56.6
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 5.7e-26 122.1 123 50.4
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 1.3e-25 120.9 175 38.9
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.5e-18 97.4 107 46.7
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 5.0e-14 82.4 100 47.0
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 8.6e-14 81.6 80 48.8
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 3.6e-12 76.3 239 33.1
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 2.4e-08 63.5 120 34.2
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 2.7e-07 60.1 204 27.9
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 3.5e-07 59.7 75 52.0
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 2.9e-06 56.6 55 52.7


User provided reference genes

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