Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1309G3100 Vigna mungo HOM05D001093 ORTHO05D000743 6.6e-170 600.5 284 100.0
Phvul.009G148401 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 1.8e-74 283.5 201 68.7
Lj1g0015961 Lotus japonicus HOM05D001093 ORTHO05D000743 1.7e-72 276.9 253 56.1
Medtr3g095800 Medicago truncatula HOM05D001093 ORTHO05D000743 1.7e-72 276.9 255 53.3
Psat5g062080 Pisum sativum HOM05D001093 ORTHO05D000743 2.1e-67 260.0 299 47.2
Glyma.04G214800 Glycine max HOM05D001093 ORTHO05D000743 7.3e-60 235.0 255 51.0
TPR.G24060 Trifolium pratense HOM05D001093 ORTHO05D000743 2.6e-57 226.5 327 39.1
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 2.9e-32 143.3 282 37.2
Ciclev10025832m.g Citrus clementina HOM05D001093 ORTHO05D000743 2.5e-31 140.2 273 32.6
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 1.8e-29 134.0 255 34.5
Dinv24318 Davidia involucrata HOM05D001093 ORTHO05D000743 6.7e-29 132.1 292 31.5
Potri.007G110400 Populus trichocarpa HOM05D001093 ORTHO05D000743 6.7e-29 132.1 277 30.7
Sabra07G0090300 Salix brachista HOM05D001093 ORTHO05D000743 6.7e-29 132.1 285 29.5
Manes.12G152400 Manihot esculenta HOM05D001093 ORTHO05D000743 8.7e-29 131.7 279 31.5
Nn1g06166 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.3e-27 127.9 265 33.2
Lj4C851G10 Lonicera japonica HOM05D001093 ORTHO05D000743 2.4e-26 123.6 259 30.5
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.3e-24 117.9 307 29.0
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 6.7e-21 105.5 256 30.9
TPR.G7732 Trifolium pratense HOM05D001093 ORTHO05D000743 2.0e-20 104.0 272 29.8
Nitab4.5_0002121g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 4.3e-20 102.8 348 26.4
MD05G1018500 Malus domestica HOM05D001093 ORTHO05D000743 5.7e-20 102.4 284 28.9
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 5.7e-20 102.4 282 29.8
Peaxi162Scf01184g00141 Petunia axillaris HOM05D001093 ORTHO05D000743 1.3e-19 101.3 256 28.5
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 2.2e-19 100.5 258 27.5
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 2.2e-19 100.5 258 29.5
Lj5g0005381 Lotus japonicus HOM05D001093 ORTHO05D000743 2.8e-19 100.1 294 27.9
Sc02g0004330 Simmondsia chinensis HOM05D001093 ORTHO05D000743 3.7e-19 99.8 270 25.6
Cc07_g17870 Coffea canephora HOM05D001093 ORTHO05D000743 4.8e-19 99.4 354 25.7
Migut.C01024 Erythranthe guttata HOM05D001093 ORTHO05D000743 4.8e-19 99.4 251 29.9
Solyc04g009400.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.4e-18 97.8 249 30.1
Sopen04g004530 Solanum pennellii HOM05D001093 ORTHO05D000743 2.4e-18 97.1 249 30.1
ECA236G3128 Erigeron canadensis HOM05D001093 ORTHO05D000743 3.1e-18 96.7 297 26.9
Lalb_Chr06g0161481 Lupinus albus HOM05D001093 ORTHO05D000743 3.1e-18 96.7 288 27.4
Nitab4.5_0004105g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 4.1e-18 96.3 309 25.9
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 5.3e-18 95.9 290 27.9
SGA_v2.0_scaffold250G45002 Striga asiatica HOM05D001093 ORTHO05D000743 5.3e-18 95.9 346 26.0
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 9.1e-18 95.1 259 27.8
DCAR_014418 Daucus carota HOM05D001093 ORTHO05D000743 1.2e-17 94.7 269 26.0
Nitab4.5_0013462g0030 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.2e-17 94.7 306 27.5
Psat6g194360 Pisum sativum HOM05D001093 ORTHO05D000743 1.5e-17 94.4 258 29.1
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 2.0e-17 94.0 94 48.9
Nitab4.5_0004813g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.6e-17 93.6 348 25.3
PGSC0003DMG400028673 Solanum tuberosum HOM05D001093 ORTHO05D000743 3.4e-17 93.2 348 25.3
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 5.9e-17 92.4 271 27.3
Eucgr.F02722 Eucalyptus grandis HOM05D001093 ORTHO05D000743 5.9e-17 92.4 292 26.7
TPR.G18690 Trifolium pratense HOM05D001093 ORTHO05D000743 5.9e-17 92.4 290 26.9
Migut.C01023 Erythranthe guttata HOM05D001093 ORTHO05D000743 7.7e-17 92.0 290 28.3
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 2.2e-16 90.5 202 36.6
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 2.2e-16 90.5 260 30.0
MD10G1018200 Malus domestica HOM05D001093 ORTHO05D000743 5.0e-16 89.4 300 27.7
Glyma.06G230000 Glycine max HOM05D001093 ORTHO05D000743 6.5e-16 89.0 261 28.0
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 6.5e-16 89.0 357 24.9
Glyma.10G227100 Glycine max HOM05D001093 ORTHO05D000743 8.5e-16 88.6 277 26.7
Glyma.10G227200 Glycine max HOM05D001093 ORTHO05D000743 8.5e-16 88.6 277 27.4
Solyc11g005740.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 8.5e-16 88.6 348 23.9
Sopen11g001700 Solanum pennellii HOM05D001093 ORTHO05D000743 8.5e-16 88.6 348 25.6
RcHm_v2.0_Chr6g0276691 Rosa chinensis HOM05D001093 ORTHO05D000743 1.9e-15 87.4 252 32.1
FAN11G1971 Fragaria x ananassa HOM05D001093 ORTHO05D000743 3.2e-15 86.7 263 28.9
Glyma.09G125400 Glycine max HOM05D001093 ORTHO05D000743 4.2e-15 86.3 260 28.8
FvH4_3g26810 Fragaria vesca HOM05D001093 ORTHO05D000743 9.4e-15 85.1 257 29.6
Glyma.20G165200 Glycine max HOM05D001093 ORTHO05D000743 9.4e-15 85.1 277 28.5
Potri.005G173200 Populus trichocarpa HOM05D001093 ORTHO05D000743 9.4e-15 85.1 360 21.9
FAN16G2856 Fragaria x ananassa HOM05D001093 ORTHO05D000743 2.1e-14 84.0 263 27.8
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 3.6e-14 83.2 262 24.4
Lsat_1_v5_gn_8_117260 Lactuca sativa HOM05D001093 ORTHO05D000743 4.7e-14 82.8 327 24.2
Phvul.004G100400 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 6.1e-14 82.4 262 27.9
Migut.C01022 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.0e-13 81.6 272 29.0
Thhalv10011612m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 1.4e-13 81.3 105 42.9
Cc10_g14180 Coffea canephora HOM05D001093 ORTHO05D000743 1.8e-13 80.9 92 41.3
Lsat_1_v5_gn_3_107161 Lactuca sativa HOM05D001093 ORTHO05D000743 1.8e-13 80.9 296 23.6
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 3.9e-13 79.7 87 41.4
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 5.2e-13 79.3 344 23.3
Psat0s667g0160 Pisum sativum HOM05D001093 ORTHO05D000743 5.2e-13 79.3 257 25.7
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 8.8e-13 78.6 96 40.6
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 8.8e-13 78.6 364 22.8
ClCG09G009890 Citrullus lanatus HOM05D001093 ORTHO05D000743 1.5e-12 77.8 233 29.2
Sabra05G0130700 Salix brachista HOM05D001093 ORTHO05D000743 1.5e-12 77.8 335 23.3
Migut.H00747 Erythranthe guttata HOM05D001093 ORTHO05D000743 2.0e-12 77.4 111 37.8
Nitab4.5_0000504g0100 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.0e-12 77.4 350 24.3
Sabra05G0144700 Salix brachista HOM05D001093 ORTHO05D000743 2.0e-12 77.4 359 22.6
AUR62017920 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.6e-12 77.0 120 37.5
Actinidia01147 Actinidia chinensis HOM05D001093 ORTHO05D000743 4.4e-12 76.3 80 46.2
arahy.Tifrunner.gnm1.ann1.43LRWI Arachis hypogaea HOM05D001093 ORTHO05D000743 4.4e-12 76.3 314 24.2
Manes.18G089400 Manihot esculenta HOM05D001093 ORTHO05D000743 5.7e-12 75.9 395 23.8
Zm00001eb407390 Zea mays HOM05D001093 ORTHO05D000743 5.7e-12 75.9 81 42.0
TPR.G39589 Trifolium pratense HOM05D001093 ORTHO05D000743 7.4e-12 75.5 257 24.5
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 9.7e-12 75.1 80 38.8
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 1.3e-11 74.7 257 25.3
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 1.7e-11 74.3 85 45.9
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 1.7e-11 74.3 85 45.9
Aqoxy6G00388 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 2.2e-11 73.9 91 42.9
CARHR035520 Cardamine hirsuta HOM05D001093 ORTHO05D000743 2.8e-11 73.6 89 44.9
Nitab4.5_0004819g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.8e-11 73.6 355 23.7
Peaxi162Scf00071g00201 Petunia axillaris HOM05D001093 ORTHO05D000743 2.8e-11 73.6 182 30.8
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 2.8e-11 73.6 102 39.2
AUR62003609 Chenopodium quinoa HOM05D001093 ORTHO05D000743 3.7e-11 73.2 116 36.2
HanXRQChr09g0258361 Helianthus annuus HOM05D001093 ORTHO05D000743 4.8e-11 72.8 196 29.6
Os12g0161500 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 4.8e-11 72.8 81 38.3
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 6.3e-11 72.4 85 44.7
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 6.3e-11 72.4 85 44.7
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 6.3e-11 72.4 85 44.7
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.3e-11 72.4 84 44.0
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 6.3e-11 72.4 84 44.0
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 6.3e-11 72.4 90 38.9
Potri.005G189400 Populus trichocarpa HOM05D001093 ORTHO05D000743 6.3e-11 72.4 101 40.6
Solyc04g050720.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 6.3e-11 72.4 188 29.8
Oeu032979.1 Olea europaea HOM05D001093 ORTHO05D000743 8.2e-11 72.0 169 30.8
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 8.2e-11 72.0 82 43.9
PSO541G5809 Papaver somniferum HOM05D001093 ORTHO05D000743 1.1e-10 71.6 74 44.6
CiPaw.15G019400 Carya illinoinensis HOM05D001093 ORTHO05D000743 1.4e-10 71.2 85 41.2
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 1.4e-10 71.2 84 41.7
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.4e-10 71.2 257 25.3
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 1.8e-10 70.9 97 36.1
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 1.8e-10 70.9 86 43.0
Dinv25836 Davidia involucrata HOM05D001093 ORTHO05D000743 1.8e-10 70.9 147 34.7
Peaxi162Scf00012g01919 Petunia axillaris HOM05D001093 ORTHO05D000743 2.4e-10 70.5 69 46.4
Lsat_1_v5_gn_3_106880 Lactuca sativa HOM05D001093 ORTHO05D000743 3.1e-10 70.1 81 42.0
Prupe.8G022600 Prunus persica HOM05D001093 ORTHO05D000743 3.1e-10 70.1 104 38.5
SHI09430 Sapria himalayana HOM05D001093 ORTHO05D000743 3.1e-10 70.1 131 31.3
Ah.02g121920 Amaranthus hybridus HOM05D001093 ORTHO05D000743 4.1e-10 69.7 102 36.3
RcHm_v2.0_Chr3g0451401 Rosa chinensis HOM05D001093 ORTHO05D000743 4.1e-10 69.7 282 25.5
THA.LOC104806851 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 4.1e-10 69.7 110 39.1
Migut.C01021 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.3e-10 69.3 78 41.0
COL.COLO4_08293 Corchorus olitorius HOM05D001093 ORTHO05D000743 7.0e-10 68.9 79 43.0
PSO675G4714 Papaver somniferum HOM05D001093 ORTHO05D000743 9.1e-10 68.6 74 44.6
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.2e-09 68.2 87 40.2
Nitab4.5_0000138g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.6e-09 67.8 259 27.0
TWI60G1406 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 1.6e-09 67.8 84 42.9
Medtr6g044110 Medicago truncatula HOM05D001093 ORTHO05D000743 2.0e-09 67.4 94 36.2
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 2.6e-09 67.0 88 38.6
arahy.Tifrunner.gnm1.ann1.U9V461 Arachis hypogaea HOM05D001093 ORTHO05D000743 2.6e-09 67.0 330 22.4
Carub.0001s3475 Capsella rubella HOM05D001093 ORTHO05D000743 2.6e-09 67.0 88 40.9
Nitab4.5_0000299g0300 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.6e-09 67.0 77 39.0
Os12g0161900 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 2.6e-09 67.0 81 35.8
Ca_19334_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 3.5e-09 66.6 83 38.6
Nitab4.5_0013142g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 3.5e-09 66.6 80 40.0
PGSC0003DMG402000788 Solanum tuberosum HOM05D001093 ORTHO05D000743 4.5e-09 66.2 82 36.6
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 7.7e-09 65.5 103 35.0
DCAR_010276 Daucus carota HOM05D001093 ORTHO05D000743 7.7e-09 65.5 80 38.8
Psat1g092320 Pisum sativum HOM05D001093 ORTHO05D000743 7.7e-09 65.5 82 40.2
SalBow6G2465 Salvia bowleyana HOM05D001093 ORTHO05D000743 7.7e-09 65.5 87 37.9
MSTRG.1367 Avicennia marina HOM05D001093 ORTHO05D000743 1.3e-08 64.7 88 35.2
Psat0s667g0240 Pisum sativum HOM05D001093 ORTHO05D000743 1.3e-08 64.7 75 41.3
Solyc04g070990.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.3e-08 64.7 84 35.7
Sopen04g026940 Solanum pennellii HOM05D001093 ORTHO05D000743 1.3e-08 64.7 84 35.7
AUR62013521 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.2e-08 63.9 229 25.3
FvH4_6g03141 Fragaria vesca HOM05D001093 ORTHO05D000743 2.2e-08 63.9 285 26.0
CDE08G1401 Ceratophyllum demersum HOM05D001093 ORTHO05D000743 2.9e-08 63.5 250 21.6
AUR62026754 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.9e-08 63.5 227 24.7
Medtr6g034375 Medicago truncatula HOM05D001093 ORTHO05D000743 2.9e-08 63.5 255 23.5
Medtr6g052260 Medicago truncatula HOM05D001093 ORTHO05D000743 2.9e-08 63.5 78 37.2
Os03g0421000 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 3.8e-08 63.2 77 35.1
FAN27G2937 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.1e-07 61.6 87 39.1
Medtr2g006220 Medicago truncatula HOM05D001093 ORTHO05D000743 1.1e-07 61.6 58 48.3
ECA232G2941 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.5e-07 61.2 90 34.4
SGA_v2.0_scaffold48G17955 Striga asiatica HOM05D001093 ORTHO05D000743 9.4e-07 58.5 48 52.1
AUR62017921 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.2e-06 58.2 62 40.3
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 1.2e-06 58.2 50 50.0
PGSC0003DMG400032558 Solanum tuberosum HOM05D001093 ORTHO05D000743 1.2e-06 58.2 53 45.3
TPR.G37844 Trifolium pratense HOM05D001093 ORTHO05D000743 2.1e-06 57.4 53 45.3
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 2.7e-06 57.0 271 23.6
Psat1g092360 Pisum sativum HOM05D001093 ORTHO05D000743 4.7e-06 56.2 59 45.8
SalBow2G0165 Salvia bowleyana HOM05D001093 ORTHO05D000743 4.7e-06 56.2 86 36.0
Mapoly0047s0113 Marchantia polymorpha HOM05D001093 ORTHO05D000743 6.1e-06 55.8 99 36.4


User provided reference genes

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