Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 2.6e-77 292.0 148 100.0
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 2.5e-51 205.7 148 75.0
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 3.8e-44 181.8 156 65.4
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 4.7e-42 174.9 156 64.7
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 2.7e-21 105.9 154 46.1
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.9e-19 99.8 190 42.6
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 7.3e-19 97.8 155 45.2
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 7.3e-19 97.8 130 46.2
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 7.3e-19 97.8 144 44.4
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 8.1e-18 94.4 169 40.8
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 8.1e-18 94.4 180 41.1
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 1.1e-17 94.0 144 44.4
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 1.4e-17 93.6 180 40.6
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.8e-17 93.2 190 40.0
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 2.3e-17 92.8 181 40.9
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 2.3e-17 92.8 180 40.6
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 3.1e-17 92.4 177 41.8
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 4.0e-17 92.0 163 41.1
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 5.2e-17 91.7 139 43.2
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 6.8e-17 91.3 195 39.0
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 1.5e-16 90.1 172 40.7
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.5e-16 90.1 140 42.1
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 1.5e-16 90.1 172 39.0
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 2.6e-16 89.4 150 43.3
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 3.4e-16 89.0 152 42.8
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.4e-16 89.0 157 40.8
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 3.4e-16 89.0 185 41.1
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 7.5e-16 87.8 139 41.7
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 7.5e-16 87.8 158 41.1
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 9.9e-16 87.4 69 65.2
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 2.2e-15 86.3 183 39.9
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 2.9e-15 85.9 138 44.2
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 2.9e-15 85.9 172 39.5
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.9e-15 85.9 143 42.0
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 2.9e-15 85.9 136 41.9
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 3.7e-15 85.5 108 50.0
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.9e-15 85.1 160 41.2
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 6.4e-15 84.7 184 38.6
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.1e-14 84.0 146 41.1
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 1.1e-14 84.0 174 39.1
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-14 84.0 174 39.1
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.1e-14 84.0 173 38.7
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.4e-14 83.6 164 38.4
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.4e-14 83.6 154 39.6
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.9e-14 83.2 160 41.9
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 3.2e-14 82.4 164 39.0
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 4.1e-14 82.0 138 42.8
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 4.1e-14 82.0 172 38.4
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 5.4e-14 81.6 136 43.4
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 7.1e-14 81.3 107 47.7
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 1.2e-13 80.5 172 36.6
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.6e-13 80.1 136 42.6
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 2.1e-13 79.7 153 40.5
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 2.1e-13 79.7 154 40.3
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 2.7e-13 79.3 155 36.1
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 4.6e-13 78.6 164 37.8
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 4.6e-13 78.6 154 42.2
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.0e-12 77.4 137 39.4
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 1.3e-12 77.0 193 36.8
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.3e-12 77.0 106 48.1
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 2.3e-12 76.3 179 35.2
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 3.9e-12 75.5 69 59.4
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 3.9e-12 75.5 161 41.0
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 6.6e-12 74.7 141 39.0
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 8.6e-12 74.3 155 36.8
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 8.6e-12 74.3 157 38.2
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.5e-11 73.6 180 35.0
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.5e-11 73.6 58 67.2
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 1.5e-11 73.6 153 37.9
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 3.3e-11 72.4 162 37.0
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 4.7e-10 68.6 148 36.5
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 6.2e-10 68.2 63 55.6
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 6.2e-10 68.2 134 38.8
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 1.1e-09 67.4 127 37.8
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 1.1e-09 67.4 146 38.4
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 1.1e-09 67.4 143 35.0
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.4e-09 67.0 162 36.4
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 1.8e-09 66.6 131 36.6
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 2.4e-09 66.2 69 46.4
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 2.4e-09 66.2 188 36.7
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 3.1e-09 65.9 118 39.0
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 3.1e-09 65.9 118 39.0
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 4.0e-09 65.5 58 53.4
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 4.0e-09 65.5 155 35.5
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 4.0e-09 65.5 122 36.9
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 5.2e-09 65.1 158 36.1
Lalb_Chr16g0378951 Lupinus albus HOM05D005432 ORTHO05D004599 8.9e-09 64.3 81 45.7
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 8.9e-09 64.3 62 46.8
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 8.9e-09 64.3 118 36.4
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.2e-08 63.9 131 37.4
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 1.2e-08 63.9 102 40.2
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 1.5e-08 63.5 143 33.6
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 2.0e-08 63.2 143 36.4
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 3.4e-08 62.4 180 32.8
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 3.4e-08 62.4 91 39.6
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 4.4e-08 62.0 149 36.9
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 4.4e-08 62.0 120 33.3
Os12g0635400 Oryza sativa ssp. japonica HOM05D028778 ORTHO05D030403 4.4e-08 62.0 88 38.6
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 5.8e-08 61.6 139 41.7
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 5.8e-08 61.6 180 35.6
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 7.6e-08 61.2 130 36.9
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 7.6e-08 61.2 130 36.9
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 7.6e-08 61.2 54 55.6
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 7.6e-08 61.2 65 53.8
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 9.9e-08 60.8 121 37.2
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 9.9e-08 60.8 88 43.2
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 9.9e-08 60.8 59 45.8
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 9.9e-08 60.8 101 37.6
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.3e-07 60.5 126 40.5
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 1.3e-07 60.5 70 50.0
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.3e-07 60.5 51 51.0
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.7e-07 60.1 56 48.2
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 1.7e-07 60.1 83 45.8
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.7e-07 60.1 105 37.1
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 2.2e-07 59.7 131 36.6
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 2.2e-07 59.7 132 36.4
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 3.8e-07 58.9 64 54.7
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 3.8e-07 58.9 52 55.8
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.8e-07 58.9 70 47.1
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.8e-07 58.9 51 51.0
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 6.4e-07 58.2 108 38.0
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 6.4e-07 58.2 115 38.3
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 8.4e-07 57.8 71 45.1
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 8.4e-07 57.8 71 45.1
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 1.4e-06 57.0 51 54.9
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 1.4e-06 57.0 124 37.1
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 1.4e-06 57.0 71 45.1
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 1.4e-06 57.0 50 54.0
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 2.4e-06 56.2 50 54.0
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 2.4e-06 56.2 52 55.8
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 2.4e-06 56.2 46 56.5
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 3.2e-06 55.8 63 50.8
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 3.2e-06 55.8 47 55.3
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 4.2e-06 55.5 85 37.6
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.2e-06 54.3 53 50.9
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 9.2e-06 54.3 146 35.6


User provided reference genes

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