Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 7.2e-184 647.1 330 100.0
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 9.8e-149 530.4 330 81.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.3e-136 487.6 337 76.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.3e-97 360.5 329 61.7
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.0e-97 359.4 335 59.7
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.9e-91 340.1 338 57.4
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 9.3e-91 337.8 346 56.6
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 7.9e-90 334.7 344 57.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.3e-89 334.0 346 56.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 5.1e-89 332.0 294 61.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 6.3e-87 325.1 305 57.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-86 324.3 306 58.2
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 6.9e-86 321.6 305 57.4
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.0e-84 317.8 305 58.0
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.3e-84 317.4 304 58.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-84 317.4 321 56.7
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.7e-84 317.0 308 55.5
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 3.8e-84 315.8 315 56.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.0e-84 315.5 339 52.8
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.4e-83 313.9 341 52.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.2e-83 312.8 316 56.3
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 9.4e-83 311.2 331 52.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.6e-82 308.9 317 54.6
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.0e-81 307.8 321 56.1
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 1.0e-81 307.8 324 55.6
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.4e-81 307.4 334 53.6
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.4e-81 307.4 334 53.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.3e-81 306.6 331 52.3
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 3.9e-81 305.8 332 53.3
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.1e-81 305.4 320 55.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.7e-81 305.1 335 51.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 8.8e-81 304.7 341 51.3
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.1e-80 304.3 303 57.8
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.1e-80 304.3 315 55.6
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.0e-80 303.5 326 54.0
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 7.4e-80 301.6 308 54.5
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 9.7e-80 301.2 311 55.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 9.7e-80 301.2 311 55.3
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.7e-79 300.4 257 61.5
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.2e-79 300.1 342 51.5
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.2e-79 300.1 295 57.3
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.8e-79 299.7 316 54.1
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.1e-78 297.7 311 55.6
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.8e-78 297.0 326 53.4
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 3.1e-78 296.2 295 56.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.5e-77 293.9 306 54.9
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.5e-77 293.9 206 69.9
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.6e-77 293.1 293 56.3
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.3e-76 290.8 300 57.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.7e-76 290.4 338 49.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 2.9e-76 289.7 229 65.9
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.9e-76 289.7 320 53.4
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 3.8e-76 289.3 351 47.9
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-75 287.7 316 52.5
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.4e-75 287.3 302 53.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.9e-75 287.0 302 54.0
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.2e-75 286.2 312 52.9
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 4.2e-75 285.8 235 60.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.2e-74 284.3 211 65.9
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.7e-74 282.3 256 58.6
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 5.1e-73 278.9 324 49.7
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 5.1e-73 278.9 211 65.9
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.7e-73 278.5 306 52.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 6.7e-73 278.5 324 50.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.5e-72 277.3 230 63.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 9.7e-72 274.6 323 49.8
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.3e-71 274.2 341 49.3
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 3.7e-71 272.7 285 51.6
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.8e-70 270.4 336 47.9
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 4.5e-69 265.8 209 63.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.7e-68 263.8 311 50.5
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.2e-68 263.5 348 47.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.0e-65 254.6 287 50.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.8e-65 253.8 338 46.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.1e-64 251.1 273 53.8
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.7e-64 248.8 209 62.7
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.3e-63 245.4 214 54.2
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.1e-62 244.6 230 54.3
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.1e-62 243.0 247 50.6
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 4.1e-62 242.7 261 55.2
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.2e-61 241.1 263 50.2
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.6e-61 240.7 320 43.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 2.0e-61 240.4 211 61.1
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.5e-60 235.3 326 45.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.5e-59 232.3 315 47.0
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.7e-58 229.9 315 46.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.0e-58 228.4 294 46.3
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-57 227.6 314 44.9
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 6.8e-57 225.3 225 52.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.3e-55 221.1 200 58.0
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.8e-55 219.9 209 56.9
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.7e-55 219.5 304 45.7
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 5.4e-54 215.7 212 50.5
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.5e-53 213.0 230 50.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-52 210.7 215 50.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.2e-52 210.3 215 50.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.2e-51 206.5 231 46.3
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-49 199.5 202 54.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.7e-48 195.7 197 52.8
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.5e-48 195.3 169 63.9
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.4e-46 190.3 261 44.1
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.0e-44 184.9 233 45.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.7e-44 184.1 221 47.1
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.6e-44 181.8 220 46.4
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.1e-43 181.4 273 41.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.7e-42 176.0 223 43.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 6.1e-42 175.6 229 42.8
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 8.0e-42 175.3 228 43.0
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.3e-41 173.7 203 44.3
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.3e-41 173.7 237 43.0
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 7.5e-40 168.7 158 55.7
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.7e-39 166.4 131 66.4
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 4.9e-39 166.0 225 42.7
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 6.3e-39 165.6 216 40.3
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.4e-38 164.5 325 39.4
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 7.0e-38 162.2 201 46.8
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.2e-37 161.4 198 41.9
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.6e-37 161.0 133 65.4
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.7e-37 160.2 216 39.8
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.9e-36 156.8 215 42.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 5.0e-36 156.0 246 37.4
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 6.6e-36 155.6 146 58.2
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.9e-35 154.1 205 40.5
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 7.3e-35 152.1 207 39.6
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.6e-34 149.8 207 40.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 9.8e-32 141.7 326 34.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 6.4e-31 139.0 300 35.0
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 6.4e-31 139.0 177 41.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 3.2e-30 136.7 110 64.5
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 7.0e-30 135.6 88 67.0
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 9.2e-30 135.2 143 50.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.6e-29 134.4 186 40.9
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.0e-28 131.7 93 64.5
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 6.6e-28 129.0 107 62.6
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.9e-27 127.5 223 37.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.1e-26 124.0 101 65.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.1e-26 124.0 106 57.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.2e-23 114.0 139 40.3
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 6.4e-23 112.5 76 72.4
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-22 111.7 118 50.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 4.6e-21 106.3 70 72.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 6.2e-18 95.9 162 39.5
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-17 92.0 131 35.9
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-14 85.1 72 63.9
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.7e-13 80.5 88 53.4
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 2.1e-10 70.9 65 50.8
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-08 64.3 44 63.6
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.4e-08 63.2 41 68.3


User provided reference genes

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