Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.3e-182 642.9 325 100.0
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.4e-171 605.5 324 94.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.5e-162 574.7 324 88.0
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.6e-156 556.2 324 86.1
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 4.8e-140 501.5 321 79.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.7e-132 476.5 325 75.7
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.6e-130 469.2 320 74.4
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 7.7e-130 467.6 329 72.6
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 2.2e-129 466.1 324 73.1
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 6.3e-124 448.0 331 71.9
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 8.2e-124 447.6 331 71.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 6.8e-94 348.2 325 54.8
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.6e-93 346.3 331 55.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.8e-93 345.1 331 54.4
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.2e-92 343.2 325 56.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.9e-92 342.8 324 54.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.1e-91 340.9 323 54.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 5.4e-91 338.6 323 55.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.6e-90 335.5 331 53.5
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.0e-90 335.1 325 52.6
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 3.0e-89 332.8 327 54.1
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 3.0e-89 332.8 331 52.6
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 3.0e-89 332.8 331 54.1
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.9e-89 332.4 329 54.1
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 3.9e-89 332.4 326 55.2
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.0e-89 332.0 284 59.5
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.0e-89 332.0 333 53.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.6e-89 331.3 329 54.4
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-88 330.9 329 53.8
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.1e-87 326.6 329 53.8
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.8e-87 326.2 333 52.9
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.8e-86 323.6 333 53.2
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.8e-86 323.6 333 52.9
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.3e-86 323.2 326 53.1
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 2.3e-86 323.2 329 52.6
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.2e-86 322.0 331 52.3
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 8.9e-86 321.2 332 53.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.0e-85 320.1 326 53.4
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.8e-85 318.5 352 51.1
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 9.8e-85 317.8 321 54.5
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.9e-84 315.5 325 50.5
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-83 314.3 321 53.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.4e-83 313.9 324 50.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.9e-83 313.5 322 52.5
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.1e-83 311.6 319 52.0
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.6e-82 310.5 312 53.2
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-82 310.1 324 50.3
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-82 310.1 324 50.3
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.1e-82 310.1 276 55.4
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 2.7e-82 309.7 322 51.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 6.0e-82 308.5 322 51.6
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.0e-81 307.8 317 51.1
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.3e-81 306.6 307 53.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 6.6e-81 305.1 332 49.4
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.9e-80 303.5 327 49.2
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.9e-80 303.5 320 51.6
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.5e-80 303.1 320 52.8
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 4.3e-80 302.4 327 51.4
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.6e-80 302.0 320 50.9
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-79 300.4 328 48.8
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.6e-79 300.4 337 50.7
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-79 300.4 322 51.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-79 299.7 317 52.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.6e-79 299.3 322 51.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.1e-78 297.7 320 50.3
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.3e-78 296.6 321 49.5
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 2.3e-78 296.6 321 50.2
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.3e-78 296.6 306 52.0
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.1e-78 296.2 323 50.8
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.1e-78 296.2 253 57.7
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.0e-78 295.8 318 50.3
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.2e-78 295.4 337 48.4
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 8.9e-78 294.7 328 50.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 2.6e-77 293.1 279 54.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.6e-77 293.1 304 52.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.6e-77 293.1 323 50.8
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.6e-77 293.1 320 49.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.4e-77 292.4 256 56.6
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.8e-77 292.0 327 48.0
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-76 290.8 327 48.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.7e-76 290.4 321 50.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 3.8e-76 289.3 283 53.7
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.8e-76 289.3 324 47.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 6.4e-76 288.5 324 47.2
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.1e-75 287.7 324 47.2
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.4e-75 287.3 324 47.2
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.4e-75 286.6 324 49.1
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.2e-75 286.2 324 50.6
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.1e-75 285.8 325 50.8
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.4e-75 285.4 320 48.4
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 7.1e-75 285.0 325 48.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.1e-75 285.0 328 50.0
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.2e-75 284.6 260 55.8
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 9.2e-75 284.6 328 48.2
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-74 283.5 320 48.1
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.1e-74 283.5 264 55.3
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.7e-74 283.1 326 48.2
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 3.5e-74 282.7 324 46.9
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.5e-74 282.7 260 55.4
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 4.6e-74 282.3 268 52.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 6.0e-74 282.0 259 55.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 7.8e-74 281.6 328 47.6
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 7.8e-74 281.6 317 48.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.0e-73 281.2 310 49.0
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.3e-73 280.8 273 51.3
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.3e-73 280.8 247 56.3
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.1e-72 277.7 268 50.4
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.1e-72 277.7 298 49.0
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.5e-72 277.3 328 45.4
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.3e-72 276.2 319 48.0
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.3e-72 275.8 326 45.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.3e-72 275.8 261 53.3
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.6e-72 275.4 293 48.1
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 5.6e-72 275.4 324 48.8
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 7.3e-72 275.0 268 54.1
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 9.6e-72 274.6 330 43.9
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.6e-71 273.9 274 51.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.8e-71 273.1 325 45.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.8e-71 273.1 325 45.5
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.8e-71 273.1 324 44.1
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.7e-71 272.3 269 49.8
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-70 271.2 325 45.5
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.4e-70 270.0 254 51.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.4e-70 270.0 289 50.9
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.1e-70 269.6 255 51.0
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 3.1e-70 269.6 319 46.1
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 4.0e-70 269.2 255 51.0
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 5.2e-70 268.9 321 45.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 5.2e-70 268.9 323 44.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.2e-69 267.7 333 45.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.5e-69 267.3 287 49.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 3.4e-69 266.2 287 50.5
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.4e-69 266.2 332 45.5
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 7.6e-69 265.0 251 52.2
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 4.9e-68 262.3 323 45.2
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 8.4e-68 261.5 294 49.3
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 8.4e-68 261.5 294 49.3
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 2.4e-67 260.0 285 49.5
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.3e-65 254.2 258 51.6
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.7e-65 253.8 258 52.3
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 8.7e-65 251.5 275 50.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 8.7e-65 251.5 256 52.7
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 1.6e-63 247.3 292 46.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 5.4e-59 232.3 252 48.4
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 7.1e-59 231.9 269 46.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 7.1e-59 231.9 277 46.6
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.6e-58 230.7 270 46.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 2.1e-58 230.3 351 41.6
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.5e-56 224.2 269 49.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 7.4e-56 221.9 250 46.0
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 7.4e-56 221.9 157 66.2
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 5.8e-53 212.2 259 45.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 6.4e-52 208.8 160 60.6
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 2.4e-51 206.8 238 49.2
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.3e-48 196.1 237 45.6
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 3.7e-47 193.0 180 50.0
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 9.3e-43 178.3 151 56.3
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.1e-42 177.2 226 45.1
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.7e-40 169.1 149 56.4
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.6e-39 167.5 246 41.1
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.8e-39 166.8 121 65.3
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.7e-36 157.5 223 43.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.7e-36 157.5 180 42.2
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 6.5e-36 155.6 267 37.5
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-35 154.8 96 83.3
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.6e-34 151.0 279 39.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 5.3e-30 136.0 223 36.8
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 7.7e-29 132.1 188 39.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 5.5e-27 125.9 88 69.3
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.8e-25 120.9 107 60.7
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.1e-25 119.4 79 70.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 8.5e-20 102.1 84 56.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 9.7e-16 88.6 76 57.9
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 6.5e-12 75.9 81 44.4
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.2e-07 58.9 51 52.9


User provided reference genes

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