Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 0.0e+00 2085.8 1060 100.0
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.2e-296 1023.5 1068 56.2
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.6e-237 825.9 589 75.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 4.7e-237 825.5 1071 47.1
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 4.9e-234 815.5 1041 48.0
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 5.4e-225 785.4 1103 45.6
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 7.1e-225 785.0 1072 45.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.7e-224 783.1 1110 45.3
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 8.7e-223 778.1 1096 45.8
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.3e-222 776.2 1109 45.4
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 7.3e-222 775.0 1114 46.1
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.2e-219 767.7 961 48.8
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.0e-219 766.9 1118 44.9
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.3e-215 753.4 1121 44.9
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.7e-213 746.1 996 46.5
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.4e-211 739.6 1065 44.6
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 4.5e-211 739.2 1117 43.8
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 4.6e-208 729.2 1107 44.1
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 7.6e-203 711.8 1111 43.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 3.0e-199 699.9 1118 42.7
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 5.7e-198 695.7 1118 41.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 3.1e-196 689.9 941 46.4
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.7e-194 684.1 1153 42.0
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 8.5e-194 681.8 1121 42.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 2.0e-187 660.6 1068 41.9
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 5.5e-185 652.5 1114 41.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.2e-184 651.4 1127 40.3
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 2.0e-182 644.0 1115 39.7
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.0e-182 644.0 1115 40.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 9.7e-182 641.7 1119 40.4
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 2.2e-181 640.6 1116 39.8
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 2.2e-181 640.6 1045 41.2
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.1e-180 638.3 954 43.8
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.4e-180 637.9 1099 40.9
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-178 630.2 1088 39.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.9e-177 627.5 1106 39.3
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.2e-177 626.3 1087 40.2
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 9.4e-177 625.2 1106 39.5
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-176 624.0 1087 40.1
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.7e-176 622.9 1106 39.9
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 6.1e-176 622.5 1087 39.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 1.8e-175 620.9 1106 39.7
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.0e-175 620.2 1092 39.8
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 3.0e-175 620.2 1120 39.7
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.1e-174 618.2 1109 39.9
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.3e-174 616.7 1110 39.4
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 4.4e-174 616.3 1068 40.4
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 4.4e-174 616.3 923 43.1
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.4e-174 616.3 1115 39.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 1.3e-173 614.8 1105 38.4
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 2.8e-173 613.6 1131 38.2
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 6.3e-173 612.5 1114 39.2
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.4e-172 610.5 1114 39.3
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.9e-171 605.9 931 43.0
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 1.0e-170 605.1 1076 38.9
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 3.2e-169 600.1 1116 39.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 3.2e-169 600.1 1112 37.6
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 4.2e-169 599.7 959 41.8
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 7.2e-169 599.0 946 43.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 6.1e-168 595.9 1006 41.1
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 3.0e-167 593.6 1115 37.8
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.2e-166 591.7 1114 37.5
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.7e-165 587.8 1068 38.1
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.7e-165 587.8 1112 38.1
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.5e-163 580.1 956 41.2
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 3.2e-161 573.5 1118 37.4
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 5.5e-161 572.8 1134 36.9
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.6e-160 571.2 899 42.3
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 4.7e-160 569.7 1100 38.6
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.4e-159 568.2 1087 37.3
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 3.4e-158 563.5 1126 36.6
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 9.8e-158 562.0 1010 39.5
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 6.3e-157 559.3 921 40.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.7e-155 553.9 896 42.0
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 5.0e-154 549.7 1108 36.8
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 8.6e-154 548.9 1108 37.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.1e-153 548.5 1116 36.8
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.5e-153 547.4 1092 37.6
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 5.6e-153 546.2 1119 36.6
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 7.3e-153 545.8 1100 36.5
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 1.6e-152 544.7 1110 37.1
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 2.1e-152 544.3 952 39.3
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 6.1e-152 542.7 1082 36.4
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 8.0e-152 542.3 1103 36.4
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.2e-150 538.5 1116 36.1
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-150 538.5 1124 36.2
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.7e-149 534.6 1130 36.4
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 2.4e-148 530.8 1109 36.2
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.0e-146 523.1 1130 36.2
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.0e-146 523.1 1042 36.3
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.9e-145 521.2 914 39.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 8.0e-144 515.8 790 41.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 4.0e-143 513.5 1092 35.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.2e-142 511.9 1116 36.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.6e-142 510.8 1075 36.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 5.8e-142 509.6 918 38.6
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 7.5e-142 509.2 955 37.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 9.8e-142 508.8 948 37.1
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-141 508.4 930 39.2
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 4.9e-141 506.5 918 38.0
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.1e-140 505.4 1132 35.0
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.4e-140 505.0 1104 36.1
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-140 504.2 1102 36.8
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-139 500.7 1095 35.6
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.3e-137 493.8 1025 36.2
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-136 491.9 1100 36.3
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 3.1e-135 487.3 755 43.0
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.6e-134 484.2 916 38.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 3.4e-134 483.8 916 38.1
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 5.8e-134 483.0 916 38.1
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.8e-134 483.0 1229 33.2
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 7.5e-134 482.6 1002 35.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.4e-132 478.4 1096 33.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 4.6e-131 473.4 918 38.5
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 7.8e-131 472.6 1107 34.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 1.1e-129 468.8 1120 33.8
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 2.5e-129 467.6 1116 34.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 8.1e-128 462.6 882 37.6
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 4.0e-127 460.3 1094 35.3
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.1e-124 450.3 749 41.0
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 4.9e-117 426.8 991 35.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 3.4e-110 404.1 295 75.9
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.7e-109 401.7 1109 32.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.2e-107 395.6 656 40.4
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.0e-106 392.5 957 32.4
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 5.8e-102 376.7 423 52.2
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 5.8e-102 376.7 846 33.3
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 3.3e-97 360.9 919 33.1
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.1e-95 355.9 858 31.9
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.0e-90 337.8 862 32.1
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 1.5e-86 325.5 853 32.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.5e-86 323.9 843 30.8
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 3.0e-82 311.2 1118 27.5
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 1.0e-74 286.2 918 27.7
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 4.1e-71 274.2 272 57.0
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.1e-68 266.2 623 33.5
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 9.4e-68 263.1 752 30.3
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 3.1e-63 248.1 820 26.3
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 8.8e-58 229.9 857 25.3
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.6e-49 201.8 380 33.9
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.7e-45 189.1 416 36.1
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 8.0e-35 153.7 209 48.8
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 2.0e-33 149.1 363 35.5
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.3e-29 136.3 191 45.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 9.5e-28 130.2 186 45.2
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 6.4e-24 117.5 341 29.0
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 8.3e-24 117.1 204 42.2
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 8.3e-24 117.1 204 42.2
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 6.6e-21 107.5 124 49.2
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-20 106.3 183 42.1
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-20 106.3 183 42.1
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 8.3e-16 90.5 181 36.5
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 9.2e-15 87.0 103 51.5
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.9e-12 79.3 202 34.7
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 9.5e-12 77.0 142 40.1
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 3.4e-09 68.6 75 54.7
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 5.8e-09 67.8 101 45.5
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-08 66.2 178 29.8
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 1.1e-07 63.5 98 44.9
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 4.1e-07 61.6 162 33.3
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.2e-06 60.1 53 49.1
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 6.0e-06 57.8 34 82.4


User provided reference genes

Program Settings