Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.1e-101 373.2 179 100.0
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 8.4e-70 267.3 180 75.6
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.6e-55 219.2 165 65.5
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.9e-53 213.0 165 63.0
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.8e-51 206.5 180 58.3
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-51 206.1 175 56.6
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 5.1e-51 204.9 176 61.4
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.5e-50 203.4 150 61.3
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 7.4e-50 201.1 146 67.8
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 7.4e-50 201.1 167 59.9
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 1.3e-49 200.3 150 62.0
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.2e-49 199.5 163 60.7
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 4.8e-49 198.4 164 57.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.3e-49 198.0 164 56.7
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.4e-48 196.8 165 59.4
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-48 196.8 164 57.3
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-48 196.8 163 57.7
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.8e-48 196.4 167 56.9
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 2.4e-48 196.1 169 62.1
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.3e-48 194.9 164 57.3
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 6.9e-48 194.5 174 54.0
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.5e-47 193.4 169 57.4
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.0e-47 193.0 162 58.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.4e-47 192.2 167 58.7
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.5e-47 191.8 167 58.7
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 4.5e-47 191.8 163 57.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 5.9e-47 191.4 170 56.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 7.7e-47 191.0 167 55.1
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.0e-46 190.7 169 54.4
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.7e-46 189.9 162 59.3
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.2e-46 189.5 176 53.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.2e-46 189.5 169 56.2
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.9e-46 189.1 171 56.1
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.9e-46 189.1 162 56.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 6.5e-46 188.0 168 56.0
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 8.5e-46 187.6 148 60.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.1e-45 187.2 165 57.6
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.1e-45 187.2 170 55.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.4e-45 186.8 165 57.0
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.9e-45 186.4 171 54.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.2e-45 185.7 168 56.0
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.5e-45 184.9 166 56.6
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 7.2e-45 184.5 164 54.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 7.2e-45 184.5 165 53.3
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 9.4e-45 184.1 142 60.6
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.2e-44 183.7 167 54.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.1e-44 183.0 165 55.2
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.6e-44 182.2 166 56.0
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 4.6e-44 181.8 170 51.8
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 7.9e-44 181.0 168 54.8
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.0e-43 180.6 165 55.2
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.0e-43 180.6 165 55.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.0e-43 180.6 157 55.4
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.3e-43 179.5 165 55.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.9e-43 178.7 145 55.9
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 3.9e-43 178.7 165 54.5
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 3.9e-43 178.7 165 54.5
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.9e-43 178.7 165 54.5
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 5.1e-43 178.3 165 52.7
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 5.1e-43 178.3 177 50.3
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.1e-43 178.3 176 48.9
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 5.1e-43 178.3 147 58.5
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 8.8e-43 177.6 165 53.9
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 8.8e-43 177.6 148 55.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.5e-42 176.8 165 53.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.5e-42 176.8 146 57.5
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.5e-42 176.8 164 54.3
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 2.5e-42 176.0 165 53.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.5e-42 176.0 169 50.9
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.3e-42 175.6 173 51.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.7e-42 174.9 166 53.6
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 5.7e-42 174.9 166 51.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 5.7e-42 174.9 162 54.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.4e-42 174.5 157 51.6
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 7.4e-42 174.5 164 53.0
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 9.7e-42 174.1 159 56.0
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.3e-41 173.7 170 51.8
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.7e-41 173.3 157 52.9
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.7e-41 172.2 163 52.1
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.7e-41 172.2 175 49.7
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.1e-40 170.6 157 50.3
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.8e-40 169.9 162 54.3
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 9.1e-40 167.5 169 49.7
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.2e-39 167.2 163 50.3
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 2.0e-39 166.4 156 51.9
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.6e-39 166.0 168 49.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.6e-39 166.0 157 51.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.5e-39 165.2 164 48.8
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 4.5e-39 165.2 153 52.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 7.7e-39 164.5 165 51.5
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 7.7e-39 164.5 159 50.3
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.0e-38 164.1 164 51.8
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.8e-38 162.2 168 49.4
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-37 160.6 164 48.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.1e-37 160.6 164 48.8
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.4e-37 160.2 168 49.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.5e-37 159.5 136 54.4
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.2e-36 157.1 152 48.7
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.0e-35 154.1 175 43.4
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 8.8e-35 151.0 172 52.9
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.6e-34 149.4 169 47.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 5.9e-31 138.3 121 57.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 8.0e-28 127.9 165 46.1
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.6e-26 122.9 143 44.1
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.3e-26 122.5 150 41.3
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.8e-25 118.6 119 47.9
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.0e-22 110.9 169 37.9
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.9e-22 109.4 105 50.5
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.9e-22 109.4 123 41.5
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 5.0e-22 108.6 78 59.0
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.2e-21 105.9 146 39.7
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 8.0e-20 101.3 170 37.6
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 5.2e-19 98.6 119 43.7
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 8.8e-19 97.8 119 43.7
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.6e-15 87.0 116 37.1
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.5e-13 80.5 120 32.5
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.0e-11 74.3 126 36.5
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.3e-11 73.2 87 44.8
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 6.8e-11 71.6 72 47.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.0e-10 70.1 74 51.4
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.0e-10 70.1 119 34.5
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 2.6e-10 69.7 46 63.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-09 67.4 126 28.6
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.0e-07 60.1 35 71.4
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.5e-07 59.3 74 47.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 4.5e-07 58.9 34 70.6


User provided reference genes

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