Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 0.0e+00 1147.1 620 100.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.0e-259 899.0 559 88.0
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.7e-239 832.8 572 81.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 2.0e-235 819.3 599 77.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.5e-169 600.5 570 60.0
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.5e-169 600.5 615 57.6
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.8e-167 593.6 574 60.5
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 7.0e-164 581.6 598 60.5
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 9.8e-158 561.2 668 52.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 9.8e-158 561.2 668 52.8
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 9.4e-153 544.7 572 59.6
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.7e-149 533.9 608 52.6
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.3e-146 523.5 612 51.6
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.5e-145 520.0 616 51.9
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 1.2e-144 517.7 617 50.9
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 4.7e-144 515.8 621 49.3
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 8.3e-141 505.0 604 49.3
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.6e-139 500.7 602 49.7
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 8.6e-138 495.0 604 48.7
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 4.3e-137 492.7 604 48.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 5.6e-137 492.3 619 49.3
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.6e-136 490.7 619 48.6
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.8e-136 490.0 604 48.3
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.6e-136 489.6 619 48.5
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 8.0e-136 488.4 592 48.8
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.3e-135 486.9 612 51.5
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 5.8e-134 482.3 608 49.5
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.7e-133 480.7 608 50.2
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 3.7e-133 479.6 627 47.5
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.4e-132 476.9 608 50.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.4e-132 475.7 608 50.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.2e-131 474.6 606 48.8
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.5e-129 467.6 624 48.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.6e-128 464.2 600 47.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.1e-127 461.5 625 46.2
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.1e-127 461.5 628 46.8
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.1e-127 459.9 624 48.9
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.1e-127 459.9 610 48.0
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 3.1e-127 459.9 581 47.3
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.0e-126 457.2 611 48.1
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.4e-125 452.2 605 47.8
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 5.4e-124 449.1 631 48.8
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.2e-123 448.0 613 49.4
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.6e-123 447.6 686 44.5
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 2.1e-123 447.2 600 47.0
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.6e-123 446.0 607 48.9
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 7.8e-123 445.3 642 44.2
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 2.3e-122 443.7 592 45.3
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 4.3e-121 439.5 578 49.0
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.1e-120 437.2 564 48.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-119 434.5 618 45.1
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 4.0e-119 433.0 615 43.4
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 2.0e-118 430.6 614 48.9
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.0e-118 430.6 632 42.9
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 7.6e-118 428.7 615 45.7
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.4e-116 424.5 623 44.0
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.9e-116 424.1 593 46.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 5.4e-116 422.5 610 44.6
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.1e-115 420.6 619 46.0
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.7e-115 420.2 572 49.1
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.7e-115 420.2 709 40.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 6.0e-115 419.1 709 41.2
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.1e-113 414.8 604 45.9
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 1.9e-113 414.1 588 47.6
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 3.3e-113 413.3 616 43.7
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 1.6e-112 411.0 613 45.2
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 2.1e-112 410.6 615 45.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 8.1e-112 408.7 630 41.7
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 8.1e-112 408.7 513 49.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 8.1e-112 408.7 588 45.2
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.8e-111 407.5 582 46.2
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.0e-110 404.1 589 45.3
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 4.4e-110 402.9 615 44.1
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 4.4e-110 402.9 602 42.2
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 7.6e-110 402.1 478 50.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 6.4e-109 399.1 614 45.1
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.4e-108 397.1 607 45.6
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 4.2e-108 396.4 617 42.1
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 5.4e-108 396.0 557 49.0
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 7.1e-108 395.6 613 44.7
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 7.1e-108 395.6 612 43.1
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.2e-107 394.8 607 45.5
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.6e-107 394.4 637 39.7
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 1.7e-106 391.0 610 43.3
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 5.6e-105 386.0 632 40.8
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 1.6e-104 384.4 614 42.2
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.1e-104 384.0 624 42.6
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.8e-104 383.6 620 40.8
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 5.3e-103 379.4 574 42.3
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-100 370.9 620 39.7
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-97 361.3 621 43.5
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 1.5e-97 361.3 621 43.5
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.9e-97 360.9 443 51.0
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 1.3e-93 348.2 624 42.3
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.4e-92 344.7 624 42.0
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 1.6e-91 341.3 560 42.5
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 3.7e-88 330.1 418 51.4
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.0e-86 324.3 417 45.8
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 4.5e-86 323.2 612 40.2
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 3.4e-78 297.0 647 38.6
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.3e-74 285.0 565 37.2
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 2.8e-72 277.3 517 36.6
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 7.2e-68 262.7 245 57.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 4.6e-67 260.0 505 37.8
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.4e-66 258.5 404 40.8
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 3.7e-56 223.8 235 55.7
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.3e-53 215.3 360 41.4
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 5.5e-44 183.3 294 41.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 8.3e-40 169.5 467 28.7
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 6.6e-29 133.3 487 26.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.9e-28 131.7 113 58.4
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.1e-27 128.3 288 32.6
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 3.6e-27 127.5 140 48.6
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.4e-26 125.6 305 34.1
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.6e-25 121.3 146 48.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.1e-23 115.9 98 59.2
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.4e-23 114.8 149 45.0
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.5e-22 110.9 143 50.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 7.8e-22 109.8 573 23.0
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.3e-21 109.0 75 68.0
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.7e-21 108.6 180 37.2
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 4.3e-20 104.0 173 49.7
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 5.6e-20 103.6 431 26.9
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 8.9e-18 96.3 173 39.3
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.5e-17 95.5 102 52.0
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 7.0e-15 86.7 181 39.8
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 2.0e-14 85.1 137 40.9
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.3e-13 82.4 138 39.9
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.1e-11 75.1 79 54.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 6.8e-10 70.1 281 26.7
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.3e-08 65.9 143 41.3
Glyma.11G112400 Glycine max HOM05D005482 ORTHO05D006502 1.3e-08 65.9 58 65.5
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.9e-08 64.7 109 41.3
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.7e-08 64.3 85 49.4
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 5.4e-07 60.5 60 53.3
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 9.2e-07 59.7 64 42.2


User provided reference genes

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