Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 3.2e-93 345.1 180 100.0
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.8e-80 302.8 179 89.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.1e-73 279.3 184 79.3
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 6.3e-73 277.7 185 76.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 6.3e-73 277.7 175 82.9
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.1e-72 276.9 184 75.5
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.4e-72 275.8 185 77.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.0e-71 272.7 184 76.1
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.6e-71 270.8 171 81.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.9e-69 266.2 179 73.7
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.6e-68 263.1 183 75.4
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.6e-68 261.9 174 78.7
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.1e-68 261.2 184 75.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 2.3e-67 259.2 180 75.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.1e-66 256.9 181 74.6
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 4.3e-66 255.0 174 76.4
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 7.4e-66 254.2 174 75.9
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 7.4e-66 254.2 174 75.3
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 9.7e-66 253.8 174 74.7
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.6e-65 253.1 173 75.1
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 4.8e-65 251.5 185 73.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 4.8e-65 251.5 176 74.4
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.8e-65 251.5 175 75.4
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.8e-65 251.5 174 74.1
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 6.3e-65 251.1 174 74.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 8.2e-65 250.8 169 76.3
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.1e-64 250.4 172 74.4
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.8e-64 249.6 174 74.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.4e-64 249.2 171 75.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 4.1e-64 248.4 184 69.0
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.3e-64 248.1 172 73.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 6.9e-64 247.7 175 73.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 9.1e-64 247.3 174 74.7
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 2.6e-63 245.7 165 76.4
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.6e-63 245.7 172 75.0
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 2.6e-63 245.7 185 72.4
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 3.4e-63 245.4 170 75.3
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 3.4e-63 245.4 181 71.8
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.0e-62 243.8 172 72.7
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.2e-62 242.7 184 69.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-62 242.7 184 69.6
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 2.2e-62 242.7 184 69.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-62 242.7 174 71.8
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-62 242.7 174 71.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.2e-62 242.7 174 71.8
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.9e-62 242.3 175 75.4
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-62 242.3 179 70.9
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.9e-62 242.3 179 70.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.8e-62 241.9 184 69.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.8e-62 241.9 174 73.6
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.8e-62 241.9 168 73.8
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 6.5e-62 241.1 162 77.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 6.5e-62 241.1 171 72.5
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.1e-61 240.4 172 72.7
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.1e-61 240.4 175 70.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.1e-61 240.4 193 66.8
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.4e-61 240.0 167 72.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.4e-61 240.0 168 72.6
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.9e-61 239.6 171 71.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.9e-61 239.6 171 71.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.9e-61 239.6 179 69.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.2e-61 238.8 171 72.5
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 3.2e-61 238.8 179 68.7
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 4.2e-61 238.4 171 71.3
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 4.2e-61 238.4 171 71.3
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.2e-61 238.4 162 74.1
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.2e-61 238.4 174 73.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.2e-61 238.4 184 68.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 5.5e-61 238.0 184 67.4
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 5.5e-61 238.0 161 73.9
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 7.2e-61 237.7 176 69.3
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-60 236.9 161 73.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.6e-60 236.5 185 68.6
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.7e-60 235.7 183 68.3
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 3.6e-60 235.3 169 71.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 4.6e-60 235.0 169 71.6
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.1e-60 234.6 174 70.7
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-59 233.0 157 74.5
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 1.8e-59 233.0 174 70.1
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.8e-59 233.0 183 67.2
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.8e-59 233.0 191 63.9
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.3e-59 232.6 191 64.9
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.0e-59 232.3 179 67.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-59 231.9 161 73.3
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 3.9e-59 231.9 156 75.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 5.1e-59 231.5 160 72.5
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 5.1e-59 231.5 191 64.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 5.1e-59 231.5 173 67.6
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 8.8e-59 230.7 172 68.6
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.5e-58 229.9 174 69.5
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.5e-58 229.9 172 69.2
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.0e-58 229.6 179 66.5
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.4e-58 228.4 172 69.2
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.7e-58 228.0 159 71.7
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 7.4e-58 227.6 158 72.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 9.7e-58 227.3 170 68.8
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 9.7e-58 227.3 175 68.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.7e-58 227.3 174 66.1
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.8e-57 225.7 200 63.0
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.8e-57 225.7 168 71.4
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.7e-57 225.3 178 65.2
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.7e-57 225.3 160 70.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 3.7e-57 225.3 160 70.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 4.8e-57 224.9 189 63.5
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 4.8e-57 224.9 160 69.4
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 8.2e-57 224.2 168 67.9
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 8.2e-57 224.2 152 73.7
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-56 223.8 200 62.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.1e-56 223.8 174 66.7
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-56 223.4 174 67.2
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 6.9e-56 221.1 172 65.1
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.9e-56 221.1 159 66.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.6e-55 219.2 184 63.0
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.9e-55 218.0 211 58.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 7.7e-55 217.6 203 60.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.3e-54 216.9 218 57.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-54 216.9 174 62.1
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.7e-54 216.5 185 63.2
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.7e-54 216.5 191 62.8
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.2e-54 216.1 160 73.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.9e-53 213.0 146 75.3
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-53 213.0 168 64.9
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 4.2e-53 211.8 172 64.0
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 9.4e-53 210.7 171 63.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-52 210.3 142 75.4
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.2e-52 210.3 170 65.3
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 6.7e-51 204.5 162 67.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.5e-50 203.4 130 76.9
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 2.0e-50 203.0 159 62.9
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.7e-50 201.4 130 78.5
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 7.4e-50 201.1 130 76.2
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 7.4e-50 201.1 130 75.4
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.7e-50 200.7 120 78.3
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.2e-49 199.5 120 81.7
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 2.2e-49 199.5 159 61.6
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.8e-49 199.1 129 77.5
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.8e-48 196.4 119 79.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 3.6e-44 182.2 145 70.3
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.0e-43 180.6 155 52.9
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.0e-43 178.7 134 72.4
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.2e-42 177.2 145 62.1
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-42 176.4 123 76.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.3e-42 175.6 123 68.3
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 9.7e-42 174.1 130 71.5
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.1e-40 168.7 143 58.7
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 9.1e-40 167.5 140 58.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 2.7e-39 166.0 161 52.2
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 3.5e-39 165.6 136 64.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.7e-38 163.3 130 65.4
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 2.1e-36 156.4 158 50.0
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.0e-35 154.1 149 49.0
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.4e-34 149.1 151 51.0
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 4.8e-33 145.2 85 82.4
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.8e-32 143.3 113 67.3
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.4e-26 122.1 108 59.3
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 7.0e-24 114.8 110 58.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.3e-22 109.8 155 44.5
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-21 106.7 90 62.2
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.3e-13 79.3 79 48.1
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.3e-11 73.2 44 79.5
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.8e-10 68.6 46 78.3
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.8e-10 68.6 46 78.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 2.2e-09 66.6 46 60.9
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 3.7e-09 65.9 47 74.5
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 71.7


User provided reference genes

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