Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.6e-253 879.0 469 100.0
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.0e-219 765.8 470 88.7
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.9e-215 751.9 474 87.1
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 5.1e-175 618.2 475 74.3
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.2e-152 543.9 407 76.7
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 5.7e-150 535.0 485 63.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 2.8e-141 506.1 485 60.2
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.8e-138 495.7 495 56.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.7e-136 489.6 491 57.6
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 1.4e-129 467.2 360 75.8
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.7e-125 453.8 482 55.6
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 7.0e-124 448.4 486 52.7
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.1e-124 448.0 410 61.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 9.1e-124 448.0 410 61.0
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 8.5e-122 441.4 503 50.1
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.9e-121 440.3 503 51.1
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 4.2e-121 439.1 509 52.7
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.2e-121 439.1 486 51.9
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.7e-120 435.6 511 52.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.7e-120 435.6 483 50.7
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 8.0e-120 434.9 483 50.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.4e-119 434.1 406 59.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.8e-119 433.7 483 50.5
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 2.3e-119 433.3 495 53.1
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.8e-119 431.8 492 54.3
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.2e-118 431.0 484 50.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.0e-118 430.3 490 52.0
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.0e-118 430.3 503 49.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.7e-118 427.9 525 49.9
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 2.8e-117 426.4 497 54.3
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 1.1e-116 424.5 529 50.1
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.4e-116 424.1 500 51.4
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.4e-116 424.1 482 50.6
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.0e-115 420.2 491 50.1
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.5e-115 419.5 491 49.5
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.9e-114 416.4 484 48.3
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 3.6e-112 409.5 479 55.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.0e-111 407.9 530 47.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.3e-111 406.8 506 53.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.2e-111 405.6 472 49.8
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 5.2e-111 405.6 503 50.5
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 6.8e-111 405.2 488 49.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.0e-110 403.7 505 50.5
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.0e-110 403.7 501 46.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 1.7e-109 400.6 483 50.5
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.2e-109 400.2 482 49.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.8e-109 399.8 481 49.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 3.7e-109 399.4 483 48.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 4.1e-108 396.0 484 47.5
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 5.4e-108 395.6 480 47.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.6e-107 394.0 478 48.5
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.7e-107 393.3 481 49.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.5e-107 392.9 479 48.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 7.7e-107 391.7 497 48.9
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.9e-106 389.8 521 46.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.9e-106 389.8 521 46.3
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 3.8e-106 389.4 481 49.5
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 6.6e-106 388.7 485 47.2
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.5e-105 387.5 474 47.5
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.5e-105 387.5 474 47.5
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.5e-105 387.5 491 47.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.5e-105 386.7 485 47.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.3e-105 386.3 496 47.0
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 4.2e-105 386.0 483 46.4
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 5.5e-105 385.6 492 47.8
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 7.2e-105 385.2 503 47.7
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.6e-104 384.0 473 47.8
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.0e-103 381.3 473 46.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.3e-103 380.2 502 47.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 5.2e-103 379.0 475 47.8
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 8.9e-103 378.3 476 47.1
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 8.9e-103 378.3 482 50.8
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 8.9e-103 378.3 494 47.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.6e-102 376.7 469 47.1
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.7e-102 375.6 504 48.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.5e-102 375.2 484 47.9
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.5e-102 375.2 496 46.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 9.8e-102 374.8 480 49.8
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 1.3e-101 374.4 507 46.0
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.4e-100 370.9 478 48.5
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.8e-100 370.5 499 45.7
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.2e-99 367.9 508 46.9
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 5.9e-99 365.5 485 47.6
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.3e-98 364.4 509 46.2
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.3e-98 364.4 537 43.4
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.3e-97 359.8 465 48.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-96 357.8 461 47.3
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.4e-95 354.4 484 45.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.1e-95 353.2 516 45.0
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 4.0e-95 352.8 522 44.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 2.0e-94 350.5 517 44.3
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 6.4e-93 345.5 501 44.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.4e-92 344.4 353 55.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 7.8e-91 338.6 509 42.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.5e-89 334.3 386 51.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 9.5e-89 331.6 418 47.4
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 7.5e-86 322.0 559 38.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.7e-85 320.9 477 44.7
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 4.9e-85 319.3 481 42.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.9e-85 319.3 490 42.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.0e-82 310.1 477 43.0
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.2e-80 304.7 476 42.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.4e-79 301.2 475 42.1
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.2e-79 299.3 475 42.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 7.6e-78 295.4 466 42.1
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.3e-77 294.7 470 40.6
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.9e-76 290.8 421 46.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 5.4e-76 289.3 484 39.7
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.7e-74 284.3 485 42.7
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.1e-74 282.7 446 41.9
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.9e-70 268.5 334 47.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.3e-69 268.1 470 37.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.1e-68 265.0 399 42.4
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 3.3e-65 253.4 492 37.6
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.2e-61 240.7 484 37.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.7e-59 233.8 478 35.4
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.1e-57 228.4 379 38.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.6e-56 223.4 495 34.7
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 8.1e-56 222.2 427 34.9
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 3.1e-55 220.3 727 28.7
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.0e-55 219.9 445 36.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.0e-55 219.9 491 34.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.0e-42 178.7 305 40.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.9e-42 176.8 210 52.4
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.4e-39 168.3 222 47.7
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.4e-39 167.5 201 48.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.9e-36 157.9 208 45.7
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.7e-35 154.1 663 28.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 5.1e-34 149.8 404 30.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.7e-34 149.4 208 46.6
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-33 148.3 395 33.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 5.0e-29 133.3 204 45.1
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.6e-27 127.1 218 38.5
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.4e-26 125.2 566 24.7
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.4e-26 125.2 211 40.8
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 3.7e-24 117.1 568 25.5
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.9e-22 109.8 202 39.6
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 5.9e-22 109.8 142 46.5
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.7e-21 108.2 201 37.8
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.1e-19 101.3 81 59.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 2.3e-18 97.8 231 31.6
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 3.0e-18 97.4 110 47.3
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.5e-17 95.1 201 36.3
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.0e-17 94.7 211 30.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.4e-17 93.6 400 28.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 9.7e-17 92.4 76 56.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.1e-15 87.0 156 41.7
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.0e-15 86.3 174 39.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 9.1e-15 85.9 595 23.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.6e-14 85.1 138 35.5
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 8.5e-13 79.3 161 34.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-10 72.4 113 46.9
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.2e-10 70.1 96 42.7
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.8e-08 64.3 292 22.6
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 4.5e-06 57.0 78 38.5
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 4.5e-06 57.0 233 27.5
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.5e-06 57.0 96 34.4
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 5.9e-06 56.6 99 33.3
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 5.9e-06 56.6 111 44.1
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 5.9e-06 56.6 99 32.3
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 5.9e-06 56.6 97 35.1
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.7e-06 56.2 77 37.7
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 34.0
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 34.0
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 34.0
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 34.0
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 7.7e-06 56.2 97 34.0


User provided reference genes

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