Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 7.4e-289 996.5 508 100.0
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.7e-275 951.4 508 94.3
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 1.5e-268 929.1 508 92.5
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 2.3e-266 921.8 510 91.6
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 3.9e-237 824.7 507 80.9
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.8e-235 818.5 510 79.8
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.5e-233 812.8 512 79.9
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 2.0e-233 812.4 507 78.5
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 4.4e-233 811.2 497 80.3
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 6.0e-230 800.8 491 79.8
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 1.3e-229 799.7 506 78.5
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 5.1e-229 797.7 501 79.0
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.1e-229 797.7 509 77.4
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 6.6e-229 797.3 509 77.4
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 8.7e-229 797.0 509 77.2
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 8.7e-229 797.0 507 79.3
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 1.9e-228 795.8 505 78.0
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 4.3e-228 794.7 493 78.3
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 5.6e-228 794.3 489 78.7
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.1e-227 790.4 515 77.5
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.1e-227 790.4 515 77.5
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.1e-226 790.0 509 77.2
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 2.4e-226 788.9 505 76.8
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.1e-226 788.5 509 76.2
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 5.2e-226 787.7 493 78.1
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 5.2e-226 787.7 506 76.7
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 9.0e-226 786.9 493 77.9
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.2e-225 786.6 504 76.4
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.4e-225 785.0 491 77.4
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 7.6e-225 783.9 504 76.4
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 7.6e-225 783.9 509 77.0
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.3e-224 783.1 502 77.1
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 1.3e-224 783.1 500 77.4
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 1.3e-224 783.1 507 76.1
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 4.9e-224 781.2 503 76.7
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.1e-223 780.0 491 76.2
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 1.9e-223 779.2 489 77.3
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.2e-223 778.5 503 76.1
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 3.2e-223 778.5 491 78.0
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 4.2e-223 778.1 503 75.9
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 9.3e-223 776.9 502 75.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 1.2e-222 776.5 493 77.5
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 2.1e-222 775.8 508 74.2
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 2.7e-222 775.4 505 76.0
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 5.1e-221 771.2 490 75.9
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 5.1e-221 771.2 503 76.7
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 6.6e-221 770.8 495 76.8
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 9.6e-220 766.9 501 75.6
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.3e-219 766.5 494 75.7
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 2.8e-219 765.4 488 78.1
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 8.1e-219 763.8 504 74.6
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.4e-218 762.3 489 76.7
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 2.4e-218 762.3 491 77.0
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 5.3e-218 761.1 489 75.9
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.9e-218 760.8 489 76.5
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.6e-217 758.8 508 73.2
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 3.8e-216 755.0 505 74.5
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.9e-215 752.7 504 72.4
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 4.2e-215 751.5 504 73.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 7.1e-215 750.7 489 75.3
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.6e-214 749.6 485 75.1
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.0e-213 746.9 489 73.6
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.8e-213 746.1 493 73.6
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 3.0e-213 745.3 504 72.8
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.3e-211 740.0 489 73.2
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 1.6e-211 739.6 489 74.0
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 1.6e-211 739.6 480 75.2
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.1e-211 739.2 489 74.2
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.8e-211 738.8 504 73.0
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.8e-211 738.0 504 72.8
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 6.2e-211 737.6 489 73.8
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 8.1e-211 737.3 489 73.8
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 8.1e-211 737.3 502 72.5
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.1e-210 736.9 489 74.0
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.4e-210 735.7 478 75.1
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 5.3e-210 734.6 490 73.5
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 9.0e-210 733.8 490 72.7
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 9.9e-209 730.3 503 71.0
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.1e-207 726.9 491 72.5
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 7.1e-207 724.2 487 73.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.6e-206 723.0 479 73.5
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.6e-206 723.0 487 71.9
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 4.6e-206 721.5 478 73.6
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.6e-206 721.5 474 74.1
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 2.3e-205 719.2 483 71.8
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.0e-205 718.8 506 71.7
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.7e-205 717.6 487 71.9
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.7e-205 717.6 487 71.9
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 2.5e-204 715.7 438 79.0
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 3.3e-204 715.3 471 72.4
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.4e-204 714.1 452 77.4
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.8e-202 709.5 487 71.5
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.4e-202 709.1 464 74.1
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.4e-202 709.1 442 78.3
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 2.6e-201 705.7 490 72.4
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 8.4e-200 700.7 464 73.7
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.1e-194 682.2 409 81.2
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 4.5e-193 678.3 504 66.7
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 8.5e-192 674.1 508 67.7
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.8e-187 659.1 479 65.1
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.5e-183 646.0 488 65.2
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.5e-183 646.0 489 64.6
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 5.5e-183 644.8 489 67.7
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.7e-182 641.7 489 64.4
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.0e-181 640.6 489 64.2
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 4.4e-180 635.2 479 67.8
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 2.4e-178 629.4 472 64.4
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.2e-176 622.9 464 64.9
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 5.0e-176 621.7 447 70.2
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.0e-173 614.0 464 63.8
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 1.1e-172 610.5 491 61.5
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 1.3e-163 580.5 430 67.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 6.5e-160 568.2 474 55.3
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.9e-159 566.6 473 56.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 3.1e-154 549.3 472 55.5
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 7.7e-153 544.7 478 54.6
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 3.7e-147 525.8 481 52.2
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 2.8e-142 509.6 447 60.0
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 3.3e-135 486.1 404 63.6
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 4.4e-132 475.7 319 73.4
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 1.6e-129 467.2 512 47.9
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.7e-128 463.8 329 71.4
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 2.1e-126 456.8 504 46.0
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 9.1e-69 265.4 209 63.2
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 1.1e-66 258.5 477 32.9
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 7.4e-55 219.2 133 77.4
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.2e-39 168.7 102 76.5
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 4.4e-39 166.8 426 26.3
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.4e-29 135.2 72 84.7
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 1.7e-22 111.7 80 72.5
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 1.4e-16 92.0 480 24.8
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 7.5e-15 86.3 66 68.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 1.7e-14 85.1 442 25.6
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.2e-06 58.2 28 92.9


User provided reference genes

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