Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 7.1e-99 364.4 253 100.0
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.4e-91 340.1 254 93.3
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 7.2e-91 337.8 253 93.7
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.3e-87 327.0 257 87.2
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 8.5e-76 287.7 252 68.7
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.9e-73 278.9 263 70.7
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 6.7e-73 278.1 262 68.7
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 5.3e-70 268.5 261 71.3
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.0e-68 264.2 253 64.4
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.1e-67 260.8 252 61.5
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.2e-67 259.2 254 65.7
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.2e-67 259.2 256 68.0
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.5e-67 258.5 254 61.0
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.2e-67 258.1 253 60.9
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 9.4e-67 257.7 253 64.8
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.7e-66 256.1 253 60.1
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 3.6e-66 255.8 253 66.8
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 3.6e-66 255.8 253 68.4
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 4.7e-66 255.4 255 78.0
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 6.1e-66 255.0 259 65.3
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 8.0e-66 254.6 254 65.4
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.2e-65 251.9 253 66.0
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.2e-64 250.8 252 60.3
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 2.0e-64 250.0 254 61.0
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 7.5e-64 248.1 252 62.3
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.2e-63 246.5 253 68.4
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 8.2e-63 244.6 253 59.7
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 8.2e-63 244.6 254 63.4
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 1.8e-62 243.4 258 60.5
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 2.4e-62 243.0 253 56.9
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.2e-61 240.7 252 66.3
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.0e-61 240.0 253 56.5
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.0e-61 240.0 253 64.0
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.3e-60 237.3 255 58.0
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.3e-60 237.3 253 57.7
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 3.8e-60 235.7 249 62.7
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.5e-59 233.0 241 66.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 2.5e-59 233.0 255 56.9
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.4e-59 231.1 254 58.3
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 9.4e-59 231.1 255 57.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.6e-58 230.3 256 63.3
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 8.0e-58 228.0 255 57.6
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.4e-57 227.3 233 61.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.8e-57 226.9 244 56.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.8e-57 226.9 260 55.0
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 3.0e-57 226.1 261 56.7
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 5.2e-57 225.3 285 61.4
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 8.8e-57 224.6 258 69.8
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-56 223.4 249 57.4
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.4e-56 222.6 258 69.0
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.4e-56 222.2 254 53.9
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 4.4e-56 222.2 258 69.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.4e-56 222.2 264 55.7
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.3e-55 220.7 253 54.5
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 3.7e-55 219.2 260 61.5
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.3e-55 218.0 241 56.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 1.1e-54 217.6 256 57.4
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 7.0e-54 214.9 255 54.9
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.2e-53 214.2 252 52.8
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.6e-53 213.8 254 57.1
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.6e-53 213.8 255 52.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 2.0e-53 213.4 248 60.1
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 7.7e-53 211.5 253 54.5
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 7.7e-53 211.5 253 54.5
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.0e-52 211.1 248 60.1
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.0e-52 211.1 250 56.8
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.3e-52 210.7 253 56.5
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.3e-52 210.7 236 60.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.3e-52 210.7 268 53.4
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 2.9e-52 209.5 255 54.5
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 5.0e-52 208.8 252 49.6
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 8.6e-52 208.0 252 53.2
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 7.2e-51 204.9 283 56.5
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.4e-49 200.7 250 60.4
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-49 200.3 254 57.5
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.8e-49 198.4 259 55.2
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.2e-47 193.4 254 56.7
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.2e-47 193.4 259 57.1
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 4.9e-47 192.2 243 58.4
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.3e-47 191.4 244 57.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.1e-46 191.0 181 65.7
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.8e-46 190.3 252 50.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.5e-45 185.7 266 48.1
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.3e-44 184.1 253 56.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.9e-43 180.3 254 51.2
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 3.3e-43 179.5 171 57.9
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 4.3e-43 179.1 236 58.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 1.4e-41 174.1 265 58.5
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.4e-41 174.1 268 45.9
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.8e-41 173.7 243 66.3
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 5.2e-41 172.2 253 45.1
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.8e-41 171.8 238 56.3
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.0e-40 170.2 238 68.5
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 4.4e-40 169.1 231 58.9
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 7.5e-40 168.3 239 67.8
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 9.8e-40 167.9 262 51.1
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 9.8e-40 167.9 248 56.0
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.9e-39 166.4 236 55.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.9e-39 166.4 278 41.7
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 3.7e-39 166.0 181 50.3
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 6.4e-39 165.2 236 55.9
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 8.3e-39 164.9 236 53.8
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.1e-38 162.5 250 53.2
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 7.0e-38 161.8 236 54.7
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.6e-37 160.6 236 56.8
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.6e-37 160.6 236 56.8
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 6.0e-37 158.7 241 53.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.0e-36 157.9 258 51.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-35 154.1 250 55.2
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.5e-35 154.1 242 53.3
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 3.3e-35 152.9 248 41.5
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.3e-35 152.9 222 55.4
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 4.3e-35 152.5 245 50.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 7.3e-35 151.8 245 49.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 7.3e-35 151.8 249 52.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.8e-34 149.8 252 41.3
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-33 147.5 239 52.7
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 2.3e-33 146.7 248 56.9
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 2.0e-32 143.7 248 53.6
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.0e-32 143.7 247 52.2
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 5.8e-32 142.1 196 58.7
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 9.8e-32 141.4 252 58.7
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 9.8e-32 141.4 252 58.7
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 9.8e-32 141.4 257 51.4
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.9e-31 139.8 254 54.7
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.9e-31 139.8 254 54.7
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.4e-30 137.5 252 54.0
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.2e-30 136.3 181 50.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.5e-29 132.9 254 50.0
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.0e-28 131.3 251 54.6
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.9e-28 129.4 247 53.4
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.6e-28 128.3 175 46.3
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 2.1e-26 123.6 244 57.0
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.8e-26 123.2 171 43.9
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.4e-22 110.9 163 42.3
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.4e-22 110.2 165 52.7
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 7.1e-22 108.6 254 33.9
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.5e-21 106.3 255 35.7
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.6e-19 99.0 93 59.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.6e-18 96.3 93 59.1
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 7.6e-16 88.6 41 97.6
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 2.2e-15 87.0 149 51.7
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-08 64.3 36 77.8
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 7.6e-08 62.0 162 30.9
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 2.2e-07 60.5 158 29.7
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 3.2e-06 56.6 159 32.7
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 9.3e-06 55.1 106 36.8
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 9.3e-06 55.1 170 29.4


User provided reference genes

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