Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0647G2013 Vigna mungo HOM05D031014 ORTHO05D019456 8.3e-181 637.5 480 100.0
VMungo0251G0653 Vigna mungo HOM05D031014 ORTHO05D437519 3.5e-38 163.7 157 54.1
VMungo0720G2313 Vigna mungo HOM05D031014 ORTHO05D000013 1.2e-30 138.7 122 59.8
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 1.0e-13 82.4 102 48.0
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 1.9e-12 78.2 102 44.1
VMungo0720G1429 Vigna mungo HOM05D031014 ORTHO05D010195 2.1e-11 74.7 71 54.9
Phvul.011G069000 Phaseolus vulgaris HOM05D003039 ORTHO05D009478 1.8e-10 71.6 34 97.1
Lj2P866T8 Lonicera japonica HOM05D003039 ORTHO05D019456 2.4e-10 71.2 106 76.4
TPR.G3049 Trifolium pratense HOM05D003039 ORTHO05D009478 5.3e-10 70.1 34 94.1
Lj5g0022385 Lotus japonicus HOM05D003039 ORTHO05D009478 6.9e-10 69.7 34 91.2
Glyma.02G009700 Glycine max HOM05D003039 ORTHO05D009478 9.0e-10 69.3 34 91.2
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 9.0e-10 69.3 32 100.0
VMungo1127G0634 Vigna mungo HOM05D003039 ORTHO05D009478 9.0e-10 69.3 32 100.0
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 4.5e-09 67.0 32 96.9
Cpa.g.sc932.1 Carica papaya HOM05D003039 ORTHO05D009478 7.6e-09 66.2 35 80.0
Ca_10260_v3 Cicer arietinum L. HOM05D003039 ORTHO05D009478 1.0e-08 65.9 32 93.8
SHI34114 Sapria himalayana HOM05D003039 ORTHO05D009478 2.9e-08 64.3 37 67.6
MELO3C012922.2 Cucumis melo HOM05D003039 ORTHO05D009478 8.4e-08 62.8 37 75.7
Sabra07G0066600 Salix brachista HOM05D003039 ORTHO05D009478 1.1e-07 62.4 34 76.5
BcaB01g06132 Brassica carinata HOM05D003039 ORTHO05D009478 1.4e-07 62.0 37 67.6
Potri.007G079400 Populus trichocarpa HOM05D003039 ORTHO05D009478 1.4e-07 62.0 36 72.2
BcaB01g06135 Brassica carinata HOM05D003039 ORTHO05D009478 1.9e-07 61.6 36 69.4
BolC3t12581H Brassica oleracea HOM05D003039 ORTHO05D009478 1.9e-07 61.6 36 69.4
C03p00150 Brassica napus HOM05D003039 ORTHO05D009478 2.5e-07 61.2 36 72.2
CAN.G439.2 Capsicum annuum HOM05D003039 ORTHO05D009478 3.2e-07 60.8 34 76.5
Eucgr.G01126 Eucalyptus grandis HOM05D003039 ORTHO05D009478 3.2e-07 60.8 33 81.8
Aqoxy7G03329 Aquilegia oxysepala HOM05D003039 ORTHO05D009478 4.2e-07 60.5 37 73.0
CDE08G1283 Ceratophyllum demersum HOM05D003039 ORTHO05D009478 4.2e-07 60.5 105 72.4
Eucgr.G01125 Eucalyptus grandis HOM05D003039 ORTHO05D009478 4.2e-07 60.5 34 76.5
CARHR001750 Cardamine hirsuta HOM05D003039 ORTHO05D009478 5.5e-07 60.1 33 78.8
CiPaw.07G121100 Carya illinoinensis HOM05D003039 ORTHO05D009478 5.5e-07 60.1 35 71.4
PGR031G3850 Punica granatum HOM05D003039 ORTHO05D009478 5.5e-07 60.1 31 77.4
Carub.0001s0150 Capsella rubella HOM05D003039 ORTHO05D009478 7.1e-07 59.7 34 73.5
DCAR_017780 Daucus carota HOM05D003039 ORTHO05D009478 7.1e-07 59.7 37 64.9
Rhsim01G0292600 Rhododendron simsii HOM05D003039 ORTHO05D009478 7.1e-07 59.7 34 70.6
Sp1g01510 Schrenkiella parvula HOM05D003039 ORTHO05D009478 7.1e-07 59.7 34 73.5
TWI14G0220 Tripterygium wilfordii HOM05D003039 ORTHO05D009478 7.1e-07 59.7 34 67.6
Actinidia25867 Actinidia chinensis HOM05D003039 ORTHO05D009478 9.3e-07 59.3 37 64.9
Gohir.A11G107600 Gossypium hirsutum HOM05D003039 ORTHO05D009478 9.3e-07 59.3 33 75.8
Gohir.D11G112400 Gossypium hirsutum HOM05D003039 ORTHO05D009478 9.3e-07 59.3 33 75.8
Gorai.007G120700 Gossypium raimondii HOM05D003039 ORTHO05D009478 9.3e-07 59.3 33 75.8
QL12p038622 Quercus lobata HOM05D003039 ORTHO05D009478 9.3e-07 59.3 33 75.8
Ah.10g033630 Amaranthus hybridus HOM05D003039 ORTHO05D009478 1.2e-06 58.9 32 78.1
Sed0013624 Sechium edule HOM05D003039 ORTHO05D009478 1.6e-06 58.5 34 73.5
AL1G11782 Arabidopsis lyrata HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 73.5
AT1G02420 Arabidopsis thaliana HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 73.5
MSTRG.18804 Avicennia marina HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 64.7
CsaV3_3G031700 Cucumis sativus L. HOM05D003039 ORTHO05D009478 2.1e-06 58.2 37 70.3
Duzib138G0793 Durio zibethinus HOM05D003039 ORTHO05D009478 2.1e-06 58.2 33 72.7
Nitab4.5_0008410g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 70.6
Nitab4.5_0009560g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 70.6
Sopen11g029340 Solanum pennellii HOM05D003039 ORTHO05D009478 2.1e-06 58.2 34 70.6
BcaB03g13512 Brassica carinata HOM05D003039 ORTHO05D009478 2.7e-06 57.8 34 67.6
Prupe.1G549200 Prunus persica HOM05D003039 ORTHO05D009478 2.7e-06 57.8 34 73.5
A08p37670 Brassica napus HOM05D003039 ORTHO05D009478 3.5e-06 57.4 36 63.9
BraA08t35663Z Brassica rapa HOM05D003039 ORTHO05D009478 3.5e-06 57.4 36 63.9
Cfa004857 Carpinus fangiana HOM05D003039 ORTHO05D009478 4.6e-06 57.0 33 69.7
ClCG10G011660 Citrullus lanatus HOM05D003039 ORTHO05D009478 4.6e-06 57.0 33 72.7
Haze_05093 Corylus avellana HOM05D003039 ORTHO05D009478 4.6e-06 57.0 33 69.7
Lj2P868T14 Lonicera japonica HOM05D003039 ORTHO05D009478 4.6e-06 57.0 32 78.1
MD08G1216300 Malus domestica HOM05D003039 ORTHO05D009478 4.6e-06 57.0 33 69.7
Solyc11g071670.2 Solanum lycopersicum HOM05D003039 ORTHO05D009478 4.6e-06 57.0 34 67.6
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 6.0e-06 56.6 33 72.7
Thecc.01G320000 Theobroma cacao HOM05D003039 ORTHO05D009478 6.0e-06 56.6 36 63.9
SalBow6G4384 Salvia bowleyana HOM05D003039 ORTHO05D009478 7.9e-06 56.2 32 71.9
TAR636G0541 Trochodendron aralioides HOM05D003039 ORTHO05D009478 7.9e-06 56.2 37 62.2
VMungo0464G0958 Vigna mungo HOM05D000062 ORTHO05D010195 7.9e-06 56.2 33 72.7


User provided reference genes

Program Settings