Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.1e-237 826.2 431 100.0
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 4.8e-212 741.1 431 90.0
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 7.4e-181 637.5 436 79.4
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.1e-179 633.6 436 79.4
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 2.0e-170 602.8 443 76.7
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 6.1e-167 591.3 435 74.9
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 3.4e-165 585.5 433 73.9
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 6.8e-158 561.2 437 71.2
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 2.4e-147 526.2 440 67.3
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 2.4e-139 499.6 440 63.2
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.3e-132 477.2 400 67.2
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 3.0e-129 466.1 444 61.0
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 6.6e-129 464.9 452 60.8
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 1.2e-127 460.7 438 60.5
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.6e-127 460.3 452 61.1
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 8.1e-127 458.0 444 62.2
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.4e-126 457.2 438 61.9
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.4e-126 456.4 452 60.8
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 5.2e-126 455.3 435 60.5
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.2e-125 454.1 393 64.9
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 1.2e-125 454.1 391 65.0
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.5e-125 453.8 436 60.6
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 2.4e-123 446.4 470 57.4
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 4.2e-123 445.7 437 61.1
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 4.2e-123 445.7 395 64.6
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.2e-123 445.7 459 57.1
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 9.2e-123 444.5 447 61.3
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 4.6e-122 442.2 392 63.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 2.5e-120 436.4 442 57.9
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 3.3e-120 436.0 433 58.9
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 5.6e-120 435.3 445 58.9
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 2.1e-119 433.3 442 59.3
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 3.6e-119 432.6 377 64.5
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 3.6e-119 432.6 412 62.1
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 6.2e-119 431.8 412 59.0
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 6.2e-119 431.8 409 61.9
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 1.1e-118 431.0 368 65.2
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.1e-118 431.0 382 62.3
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.4e-118 430.6 464 55.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 4.0e-118 429.1 367 66.8
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.2e-117 427.6 418 59.3
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 2.0e-117 426.8 410 61.0
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 5.8e-117 425.2 417 59.2
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 7.6e-117 424.9 418 59.3
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.3e-116 424.1 448 56.7
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.7e-116 423.7 363 67.5
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 3.8e-116 422.5 439 58.1
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 3.8e-116 422.5 456 55.7
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 4.9e-116 422.2 433 57.5
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.4e-115 420.6 467 55.7
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.2e-114 417.5 336 70.2
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.6e-114 417.2 439 57.9
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 3.5e-114 416.0 436 56.0
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.3e-113 413.3 458 55.9
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 3.0e-113 412.9 367 64.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 3.9e-113 412.5 444 55.9
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.6e-111 407.1 437 56.8
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.6e-111 406.0 377 61.3
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.8e-110 403.7 447 55.5
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 3.1e-110 402.9 398 59.5
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.3e-110 402.1 455 54.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 9.0e-110 401.4 359 63.5
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.4e-109 399.4 506 52.2
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 2.2e-108 396.7 376 60.6
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 2.7e-106 389.8 445 53.9
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.0e-105 387.9 310 69.4
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 5.1e-105 385.6 445 52.4
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 2.5e-104 383.3 379 59.6
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 3.7e-103 379.4 461 51.6
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 6.2e-103 378.6 380 57.9
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.4e-102 377.5 461 51.8
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.1e-99 367.9 395 56.5
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.5e-99 366.7 364 58.5
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 4.6e-98 362.5 394 56.3
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 3.0e-97 359.8 309 65.4
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 3.9e-97 359.4 463 51.4
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 3.9e-97 359.4 463 51.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.5e-96 357.5 465 49.0
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.3e-96 356.3 393 54.7
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 5.7e-96 355.5 454 51.1
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.1e-95 353.6 377 54.1
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 2.8e-95 353.2 464 49.8
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.8e-94 350.5 314 65.9
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.4e-94 350.1 440 52.0
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.1e-94 349.7 415 54.9
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.0e-94 348.2 415 54.0
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 5.8e-93 345.5 461 47.7
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 2.9e-92 343.2 391 52.2
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.6e-90 337.4 309 62.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 4.6e-90 335.9 459 49.0
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 4.6e-90 335.9 451 48.3
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 6.1e-90 335.5 320 59.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 6.1e-90 335.5 463 47.1
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.0e-89 334.7 293 64.5
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.3e-87 327.8 444 50.5
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 6.3e-87 325.5 428 49.5
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 6.3e-87 325.5 424 47.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.2e-87 325.1 497 44.7
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 8.2e-87 325.1 497 44.7
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.4e-86 324.3 445 50.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.2e-85 321.2 445 49.7
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 6.5e-84 315.5 457 46.2
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 9.4e-83 311.6 454 45.2
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.1e-82 310.5 341 58.1
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 7.9e-82 308.5 382 49.7
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.4e-81 307.8 632 37.3
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.5e-80 304.3 302 58.3
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 5.7e-80 302.4 399 47.9
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.2e-79 300.4 469 43.7
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 4.8e-79 299.3 362 51.9
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.2e-77 294.7 379 51.7
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.4e-75 287.7 309 54.7
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 9.4e-75 285.0 322 51.2
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 9.4e-75 285.0 487 40.7
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.6e-74 284.3 356 49.7
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.1e-73 279.3 455 43.5
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 7.4e-72 275.4 212 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.5e-67 260.4 350 48.9
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 3.5e-61 240.0 362 44.2
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.5e-61 239.6 201 62.2
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 4.0e-57 226.5 300 47.7
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.9e-51 207.6 426 38.0
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 5.5e-51 206.1 303 42.9
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.0e-49 201.8 312 48.1
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 7.5e-48 195.7 117 80.3
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.4e-46 191.4 112 81.2
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.6e-42 176.8 323 42.7
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 7.5e-40 169.1 392 38.0
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 3.5e-37 160.2 220 50.0
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.2e-32 145.2 379 31.9
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.8e-29 132.5 282 40.1
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.3e-28 131.7 148 42.6
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.5e-27 128.3 280 39.3
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.1e-26 124.4 69 85.5
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 4.0e-25 120.2 142 54.9
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.6e-24 117.5 325 36.3
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.5e-24 115.9 74 78.4
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 8.3e-23 112.5 189 48.1
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 7.8e-21 105.9 64 76.6
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 3.3e-19 100.5 69 72.5
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.9e-15 87.4 151 43.7
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 1.2e-13 82.0 81 66.7
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 3.5e-13 80.5 51 68.6
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 1.7e-12 78.2 47 74.5
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 2.5e-11 74.3 65 49.2
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.6e-11 73.2 101 41.6
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.8e-10 70.9 152 27.0
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.8e-10 70.9 58 62.1
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 6.2e-10 69.7 138 42.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.8e-08 63.2 52 61.5
TPR.G37410 Trifolium pratense HOM05D004969 ORTHO05D413026 1.1e-06 58.9 88 51.1


User provided reference genes

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