Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G1431 Vigna mungo HOM05D006661 ORTHO05D008369 8.0e-117 423.7 205 100.0
Phvul.006G168200 Phaseolus vulgaris HOM05D006661 ORTHO05D008369 2.0e-112 409.1 205 96.6
Glyma.13G222200 Glycine max HOM05D006661 ORTHO05D008369 1.3e-106 389.8 205 90.7
Lalb_Chr18g0055101 Lupinus albus HOM05D006661 ORTHO05D008369 3.2e-105 385.2 205 88.3
Psat1g192360 Pisum sativum HOM05D006661 ORTHO05D008369 3.5e-104 381.7 205 87.3
Ca_00502_v3 Cicer arietinum L. HOM05D006661 ORTHO05D008369 6.0e-104 380.9 203 87.7
Lj4g0006609 Lotus japonicus HOM05D006661 ORTHO05D008369 1.3e-103 379.8 203 87.7
Gohir.D06G089000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 1.7e-103 379.4 205 86.8
PGR031G2394 Punica granatum HOM05D006661 ORTHO05D008369 2.3e-103 379.0 205 86.8
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 3.9e-103 378.3 205 86.3
Duzib187G1697 Durio zibethinus HOM05D006661 ORTHO05D008369 3.9e-103 378.3 205 86.3
Thecc.09G051500 Theobroma cacao HOM05D006661 ORTHO05D008369 3.9e-103 378.3 205 86.8
Gohir.A06G090000 Gossypium hirsutum HOM05D006661 ORTHO05D008369 5.1e-103 377.9 205 86.3
Medtr2g018310 Medicago truncatula HOM05D006661 ORTHO05D008369 1.1e-102 376.7 203 86.2
TPR.G20633 Trifolium pratense HOM05D006661 ORTHO05D008369 1.1e-102 376.7 205 86.3
TWI34G0500 Tripterygium wilfordii HOM05D006661 ORTHO05D008369 1.5e-102 376.3 205 86.3
Atru.chr7.2017 Acer truncatum HOM05D006661 ORTHO05D008369 4.3e-102 374.8 205 85.4
arahy.Tifrunner.gnm1.ann1.KA607S Arachis hypogaea HOM05D006661 ORTHO05D008369 9.5e-102 373.6 205 84.9
arahy.Tifrunner.gnm1.ann1.R5Q5WD Arachis hypogaea HOM05D006661 ORTHO05D008369 2.1e-101 372.5 205 84.4
CANSAT25G2346 Cannabis sativa HOM05D006661 ORTHO05D008369 2.1e-101 372.5 205 84.9
Gorai.010G102800 Gossypium raimondii HOM05D006661 ORTHO05D008369 2.1e-101 372.5 205 86.3
Cfa017936 Carpinus fangiana HOM05D006661 ORTHO05D008369 2.8e-101 372.1 205 85.4
ClCG08G016930 Citrullus lanatus HOM05D006661 ORTHO05D008369 1.4e-100 369.8 205 83.9
CiPaw.16G029900 Carya illinoinensis HOM05D006661 ORTHO05D008369 6.8e-100 367.5 205 84.4
Eucgr.H03073 Eucalyptus grandis HOM05D006661 ORTHO05D008369 8.9e-100 367.1 205 83.9
Sed0008959 Sechium edule HOM05D006661 ORTHO05D008369 8.9e-100 367.1 205 84.4
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 1.2e-99 366.7 205 83.4
FvH4_2g32150 Fragaria vesca HOM05D006661 ORTHO05D008369 2.6e-99 365.5 205 84.9
FAN24G0958 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.6e-99 365.5 205 84.9
FAN15G2916 Fragaria x ananassa HOM05D006661 ORTHO05D008369 3.4e-99 365.2 205 84.9
FAN20G2753 Fragaria x ananassa HOM05D006661 ORTHO05D008369 3.4e-99 365.2 205 84.9
Prupe.1G414600 Prunus persica HOM05D006661 ORTHO05D008369 3.4e-99 365.2 205 84.4
QL02p001540 Quercus lobata HOM05D006661 ORTHO05D008369 5.8e-99 364.4 204 82.4
Potri.018G056100 Populus trichocarpa HOM05D006661 ORTHO05D008369 7.6e-99 364.0 205 82.9
RcHm_v2.0_Chr6g0310531 Rosa chinensis HOM05D006661 ORTHO05D008369 7.6e-99 364.0 205 84.9
CSS0024744 Camellia sinensis var. sinensis HOM05D006661 ORTHO05D008369 1.3e-98 363.2 205 82.0
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 2.2e-98 362.5 205 82.0
Sabra06G0181100 Salix brachista HOM05D006661 ORTHO05D008369 2.9e-98 362.1 205 81.5
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 4.9e-98 361.3 205 82.0
SGA_v2.0_scaffold88G27220 Striga asiatica HOM05D006661 ORTHO05D008369 1.1e-97 360.1 205 81.0
SalBow4G0568 Salvia bowleyana HOM05D006661 ORTHO05D008369 1.4e-97 359.8 205 81.5
MSTRG.11669 Avicennia marina HOM05D006661 ORTHO05D008369 1.9e-97 359.4 205 82.4
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 4.1e-97 358.2 205 81.5
MD08G1044700 Malus domestica HOM05D006661 ORTHO05D008369 4.1e-97 358.2 205 82.4
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 5.4e-97 357.8 205 81.0
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 5.4e-97 357.8 205 81.5
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 7.1e-97 357.5 205 81.0
Migut.A00149 Erythranthe guttata HOM05D006661 ORTHO05D008369 7.1e-97 357.5 205 80.5
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 1.2e-96 356.7 205 81.0
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 1.2e-96 356.7 205 81.0
Manes.16G078200 Manihot esculenta HOM05D006661 ORTHO05D008369 1.2e-96 356.7 195 85.1
Lsat_1_v5_gn_6_13140 Lactuca sativa HOM05D006661 ORTHO05D008369 3.5e-96 355.1 205 80.5
Aqoxy7G01325 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 6.0e-96 354.4 205 80.0
TAR383G0029 Trochodendron aralioides HOM05D006661 ORTHO05D008369 6.0e-96 354.4 205 81.0
unitig_748.g7518 Utricularia gibba HOM05D006661 ORTHO05D008369 6.0e-96 354.4 203 81.8
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 1.0e-95 353.6 205 80.0
Actinidia01201 Actinidia chinensis HOM05D006661 ORTHO05D008369 1.3e-95 353.2 203 79.3
Nitab4.5_0000359g0060 Nicotiana tabacum HOM05D006661 ORTHO05D008369 1.7e-95 352.8 205 80.0
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 2.3e-95 352.4 205 79.5
HanXRQChr09g0251201 Helianthus annuus HOM05D006661 ORTHO05D008369 3.0e-95 352.1 205 80.0
GSVIVG01035347001 Vitis vinifera HOM05D006661 ORTHO05D008369 3.0e-95 352.1 205 78.5
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 3.9e-95 351.7 191 85.9
Hund03354 Selenicereus undatus HOM05D006661 ORTHO05D008369 5.1e-95 351.3 205 79.0
ECA233G6145 Erigeron canadensis HOM05D006661 ORTHO05D008369 6.6e-95 350.9 205 79.0
Nn6g35396 Nelumbo nucifera HOM05D006661 ORTHO05D008369 1.1e-94 350.1 205 79.0
Peaxi162Scf00436g00823 Petunia axillaris HOM05D006661 ORTHO05D008369 1.5e-94 349.7 205 78.0
Rhsim11G0046400 Rhododendron simsii HOM05D006661 ORTHO05D008369 1.5e-94 349.7 205 78.0
Cc08_g10380 Coffea canephora HOM05D006661 ORTHO05D008369 1.9e-94 349.4 205 78.5
Sopen08g019360 Solanum pennellii HOM05D006661 ORTHO05D008369 3.3e-94 348.6 205 78.0
Haze_18212 Corylus avellana HOM05D006661 ORTHO05D008369 7.3e-94 347.4 191 85.3
AUR62022048 Chenopodium quinoa HOM05D006661 ORTHO05D008369 9.6e-94 347.1 203 77.3
Solyc08g065640.3 Solanum lycopersicum HOM05D006661 ORTHO05D008369 9.6e-94 347.1 205 77.6
Nitab4.5_0001179g0020 Nicotiana tabacum HOM05D006661 ORTHO05D008369 2.1e-93 345.9 205 80.0
PGSC0003DMG400002199 Solanum tuberosum HOM05D006661 ORTHO05D008369 2.1e-93 345.9 205 77.1
Cpa.g.sc7.195 Carica papaya HOM05D006661 ORTHO05D008369 6.2e-93 344.4 191 84.8
CAN.G6.20 Capsicum annuum HOM05D006661 ORTHO05D008369 1.8e-92 342.8 205 77.1
Os01g0559000 Oryza sativa ssp. japonica HOM05D006661 ORTHO05D008369 2.4e-92 342.4 205 76.1
Zm00001eb162230 Zea mays HOM05D006661 ORTHO05D008369 4.0e-92 341.7 205 75.6
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 8.9e-92 340.5 203 79.3
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 5.8e-91 337.8 191 82.2
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 9.9e-91 337.0 191 82.2
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 9.9e-91 337.0 191 82.2
vmacro00160 Vaccinium macrocarpon HOM05D006661 ORTHO05D008369 8.4e-90 334.0 191 80.1
PSO832G3146 Papaver somniferum HOM05D006661 ORTHO05D008369 2.4e-89 332.4 203 76.4
ATR0789G168 Amborella trichopoda HOM05D006661 ORTHO05D008369 1.3e-87 326.6 203 73.9
CDE07G0448 Ceratophyllum demersum HOM05D006661 ORTHO05D008369 1.5e-86 323.2 205 74.6
DCAR_003069 Daucus carota HOM05D006661 ORTHO05D008369 1.9e-86 322.8 189 78.3
HPP92_005507 Vanilla planifolia HOM05D006661 ORTHO05D008369 1.3e-85 320.1 205 71.2
Hma1.2p1_2451F.1_g322380 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 1.6e-80 303.1 205 70.2
MELO3C030341.2 Cucumis melo HOM05D006661 ORTHO05D008369 6.0e-80 301.2 264 59.8
AUR62009178 Chenopodium quinoa HOM05D006661 ORTHO05D008369 2.8e-77 292.4 175 76.6
EL10Ac2g03924 Beta vulgaris HOM05D006661 ORTHO05D008369 5.8e-75 284.6 211 64.9
Lj8A552G6 Lonicera japonica HOM05D006661 ORTHO05D008369 9.9e-75 283.9 163 82.8
Hma1.2p1_0450F.1_g155690 Hydrangea macrophylla HOM05D006661 ORTHO05D008369 6.4e-74 281.2 166 79.5
SMO169G0297 Selaginella moellendorffii HOM05D006661 ORTHO05D008369 4.3e-70 268.5 190 64.2
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 2.1e-69 266.2 196 63.3
Aqoxy6G02410 Aquilegia oxysepala HOM05D006661 ORTHO05D008369 1.8e-68 263.1 214 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 2.4e-68 262.7 197 61.4
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 4.0e-68 261.9 196 61.2
FAN27G1843 Fragaria x ananassa HOM05D006661 ORTHO05D008369 2.3e-63 246.1 168 76.2
Sc23g0005520 Simmondsia chinensis HOM05D006661 ORTHO05D008369 6.3e-61 238.0 134 82.8
Sabra06G0180500 Salix brachista HOM05D006661 ORTHO05D008369 1.4e-60 236.9 134 82.1
PSO063G2325 Papaver somniferum HOM05D006661 ORTHO05D008369 1.6e-56 223.4 131 78.6
CANSAT78G0664 Cannabis sativa HOM05D006661 ORTHO05D008369 2.2e-53 213.0 119 84.9
SEGI_00170 Sequoiadendron giganteum HOM05D006661 ORTHO05D008369 1.4e-49 200.3 131 69.5
Oeu036347.1 Olea europaea HOM05D006661 ORTHO05D008369 1.5e-46 190.3 110 79.1
Sabra06G0180400 Salix brachista HOM05D006661 ORTHO05D008369 5.0e-42 175.3 97 83.5
CANSAT25G1095 Cannabis sativa HOM05D006661 ORTHO05D008369 4.2e-41 172.2 96 82.3
MD08G1045300 Malus domestica HOM05D006661 ORTHO05D008369 6.1e-40 168.3 97 81.4
Cre02.g110450 Chlamydomonas reinhardtii HOM05D006661 ORTHO05D008369 4.1e-36 155.6 193 40.9
QL02p001525 Quercus lobata HOM05D006661 ORTHO05D008369 2.2e-34 149.8 95 70.5
PRCOL_00000611 Prasinoderma coloniale HOM05D006661 ORTHO05D008369 4.0e-31 139.0 193 36.3
MCO14G523 Micromonas commoda HOM05D006661 ORTHO05D008369 1.3e-29 134.0 134 43.3
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 3.1e-20 102.8 185 33.5
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 7.7e-19 98.2 218 30.7
COL.COLO4_21031 Corchorus olitorius HOM05D006661 ORTHO05D008369 6.8e-15 85.1 44 88.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 5.7e-14 82.0 45 88.9
arahy.Tifrunner.gnm1.ann1.K04B1Q Arachis hypogaea HOM05D006661 ORTHO05D008369 5.7e-14 82.0 45 88.9
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 5.7e-14 82.0 45 88.9
arahy.Tifrunner.gnm1.ann1.XSX4PG Arachis hypogaea HOM05D006661 ORTHO05D008369 2.2e-13 80.1 45 86.7
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 6.6e-10 68.6 158 30.4
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 2.5e-09 66.6 158 32.3
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 3.3e-09 66.2 158 31.0
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 7.3e-09 65.1 158 30.4
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 9.5e-09 64.7 158 30.4
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 9.5e-09 64.7 157 29.3
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 1.2e-08 64.3 157 29.9
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 1.6e-08 63.9 157 29.9
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 2.1e-08 63.5 162 28.4
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 2.1e-08 63.5 162 32.1
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 2.8e-08 63.2 161 29.2
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 2.8e-08 63.2 161 31.7
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 2.8e-08 63.2 158 31.0
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 3.6e-08 62.8 152 29.6
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 4.7e-08 62.4 161 30.4
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 4.7e-08 62.4 157 29.9
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 4.7e-08 62.4 162 29.6
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 4.7e-08 62.4 159 28.9
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 4.7e-08 62.4 157 29.9
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 6.1e-08 62.0 153 28.1
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 6.1e-08 62.0 161 29.8
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 6.1e-08 62.0 161 29.8
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 6.1e-08 62.0 162 29.6
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 6.1e-08 62.0 158 29.1
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 8.0e-08 61.6 162 31.5
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 8.0e-08 61.6 165 30.3
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 8.0e-08 61.6 158 31.6
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 8.0e-08 61.6 161 28.6
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 1.0e-07 61.2 165 29.7
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.0e-07 61.2 157 29.3
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 1.0e-07 61.2 153 29.4
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.4e-07 60.8 158 29.1
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 1.4e-07 60.8 158 30.4
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 1.4e-07 60.8 161 29.8
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 1.4e-07 60.8 165 30.9
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 1.4e-07 60.8 157 31.2
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 1.4e-07 60.8 158 30.4
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 1.8e-07 60.5 153 30.7
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 1.8e-07 60.5 157 30.6
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 2.3e-07 60.1 157 28.7
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 2.3e-07 60.1 162 30.2
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.3e-07 60.1 161 29.8
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.3e-07 60.1 158 28.5
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 3.0e-07 59.7 158 30.4
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 3.0e-07 59.7 158 30.4
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 3.0e-07 59.7 161 29.8
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 28.7
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 4.0e-07 59.3 158 29.1
Prupe.1G326300 Prunus persica HOM05D006661 ORTHO05D008369 4.0e-07 59.3 42 66.7
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 4.0e-07 59.3 157 28.7
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 5.2e-07 58.9 158 31.0
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 5.2e-07 58.9 157 30.6
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 5.2e-07 58.9 157 31.2
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 5.2e-07 58.9 152 28.9
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 6.8e-07 58.5 157 28.7
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 8.9e-07 58.2 165 29.1
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 1.2e-06 57.8 157 28.0
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 1.2e-06 57.8 158 29.7
Nitab4.5_0004055g0120 Nicotiana tabacum HOM05D006661 ORTHO05D008369 1.5e-06 57.4 66 39.4
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 2.0e-06 57.0 146 31.5
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 3.4e-06 56.2 113 30.1
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 5.7e-06 55.5 148 27.0
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 9.8e-06 54.7 165 29.7
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 9.8e-06 54.7 171 28.1


User provided reference genes

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