Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 0.0e+00 1177.2 601 100.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.2e-234 816.6 526 78.3
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.6e-234 815.1 525 78.7
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 8.1e-234 813.9 525 78.1
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.3e-215 753.4 514 73.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 3.2e-214 748.8 527 72.5
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.3e-211 738.8 534 71.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 5.3e-209 731.5 454 80.0
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.0e-209 730.7 549 68.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 4.5e-208 728.4 530 71.1
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.0e-207 727.2 530 70.9
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.6e-205 719.9 533 69.6
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 7.9e-205 717.6 540 68.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.9e-204 715.3 532 70.3
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 8.7e-204 714.1 528 70.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.6e-202 709.9 532 69.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 9.4e-190 667.5 514 63.8
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.2e-189 667.2 516 63.2
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.0e-188 664.1 516 63.0
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.9e-188 662.1 527 63.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 6.7e-188 661.4 517 64.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.6e-187 659.4 526 64.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 4.8e-186 655.2 516 64.3
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 6.3e-186 654.8 523 62.7
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 8.2e-186 654.4 516 63.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 1.8e-185 653.3 526 62.9
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 6.9e-185 651.4 518 63.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 9.1e-185 651.0 518 63.5
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.9e-184 648.3 528 61.9
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-183 647.1 518 63.3
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.7e-183 646.7 515 63.1
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.9e-183 646.0 516 62.8
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.1e-182 644.0 518 62.0
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.2e-182 642.5 543 61.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.2e-182 642.1 527 61.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 5.5e-182 641.7 528 61.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 9.4e-182 641.0 528 62.1
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.6e-181 639.0 526 61.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 7.9e-181 637.9 524 62.6
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.0e-180 636.0 518 61.6
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 3.0e-180 636.0 525 62.1
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.1e-179 634.0 516 63.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.0e-179 633.3 532 60.7
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 7.4e-179 631.3 516 61.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.3e-178 630.6 515 62.5
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-178 629.8 513 64.5
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.8e-178 629.4 522 60.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 4.8e-178 628.6 522 60.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.1e-177 627.5 519 62.2
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.1e-177 625.9 523 62.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.3e-177 625.2 516 61.4
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 7.0e-177 624.8 519 62.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 9.1e-177 624.4 526 60.8
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.2e-176 624.0 521 61.4
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.2e-176 624.0 518 61.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-176 623.6 519 61.5
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.6e-176 623.6 521 61.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.6e-176 622.9 520 60.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.9e-176 621.7 516 62.2
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.7e-175 620.2 527 60.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.2e-175 619.8 510 61.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 5.0e-175 618.6 517 59.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.1e-174 617.5 522 61.7
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 3.2e-174 615.9 524 58.4
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.2e-173 614.0 473 67.4
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-173 612.5 532 60.2
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 3.6e-173 612.5 532 60.2
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 3.6e-173 612.5 532 60.2
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.6e-173 612.5 473 66.6
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 6.1e-173 611.7 534 59.9
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 8.0e-173 611.3 541 59.7
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-172 610.9 532 60.3
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.3e-172 609.8 510 61.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.0e-172 609.4 514 60.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.2e-172 608.6 519 61.5
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 6.7e-172 608.2 533 59.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.5e-171 607.1 519 60.9
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 9.7e-171 604.4 516 61.4
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.3e-170 604.0 455 66.6
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.7e-170 603.6 533 58.9
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 4.8e-170 602.1 517 58.2
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 6.3e-170 601.7 515 60.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 8.2e-170 601.3 536 58.4
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.1e-169 600.9 536 58.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.1e-169 600.9 532 59.0
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-169 600.5 526 61.4
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.8e-169 600.1 534 58.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-169 599.7 534 58.6
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.4e-169 599.7 534 58.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 5.3e-169 598.6 576 56.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 5.3e-169 598.6 532 58.6
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.7e-168 596.3 521 59.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.7e-168 596.3 470 63.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 3.5e-168 595.9 515 59.6
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.5e-168 595.5 529 59.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 7.7e-168 594.7 525 59.0
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-167 593.6 525 58.7
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.2e-167 593.2 506 59.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.9e-167 592.8 504 59.9
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 5.0e-167 592.0 470 63.4
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.1e-166 590.9 525 58.5
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-166 590.5 526 58.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-166 590.5 526 58.4
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-166 590.5 526 58.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 9.4e-166 587.8 543 57.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 8.0e-165 584.7 525 59.0
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.0e-164 584.3 453 64.7
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.0e-164 582.8 525 58.5
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.7e-162 575.9 514 58.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.2e-158 561.6 428 66.6
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-155 553.1 391 72.9
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 4.4e-155 552.4 377 75.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 5.4e-153 545.4 455 60.0
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.3e-150 535.0 442 62.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.3e-150 535.0 527 52.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 7.5e-147 525.0 427 62.3
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.0e-143 514.6 521 50.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.5e-142 510.0 530 51.3
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.3e-142 509.6 530 50.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 8.9e-132 474.9 382 63.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.9e-130 469.9 379 63.3
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-128 464.2 377 62.1
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.9e-114 416.8 353 59.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 5.1e-111 406.0 467 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.5e-110 404.4 521 42.2
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.3e-110 402.9 313 64.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-107 394.8 456 45.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.7e-106 391.0 343 57.7
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.2e-105 386.7 318 60.1
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 3.5e-104 383.3 537 38.7
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 9.6e-94 348.6 540 36.1
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.6e-80 303.5 217 69.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.6e-72 278.1 245 58.0
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 9.7e-70 268.9 175 77.1
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.2e-59 235.3 174 72.4
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-54 218.8 194 59.3
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-54 218.8 193 58.0
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-45 186.4 152 63.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 4.5e-43 180.3 149 59.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-42 178.7 149 62.4
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 7.2e-41 172.9 159 59.7
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.7e-40 170.2 155 56.1
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.7e-40 170.2 136 58.8
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 3.3e-25 120.9 71 84.5
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.8e-24 117.9 149 44.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.2e-22 112.5 97 52.6
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.9e-21 107.1 497 23.9
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.2e-19 102.4 141 44.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-17 94.0 74 62.2
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.4e-12 77.0 64 53.1
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.4e-12 77.0 64 53.1
VMungo0251G1292 Vigna mungo HOM05D001101 ORTHO05D000893 1.5e-09 68.9 63 61.9
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 9.5e-09 66.2 41 80.5
VMungo0331G0520 Vigna mungo HOM05D011656 ORTHO05D000893 3.1e-07 61.2 34 91.2
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.0e-07 60.8 71 43.7
VMungo0331G0721 Vigna mungo HOM05D010139 ORTHO05D011906 6.8e-07 60.1 29 93.1
VMungo1127G0111 Vigna mungo HOM05D011656 ORTHO05D014705 8.9e-07 59.7 46 69.6
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 8.9e-07 59.7 47 55.3


User provided reference genes

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