Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.9e-175 619.4 383 100.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.8e-160 568.5 383 81.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.5e-140 502.7 389 83.8
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.4e-137 492.3 386 83.4
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.7e-113 412.9 375 64.8
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 5.0e-104 382.1 392 60.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 5.0e-104 382.1 392 60.7
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 7.0e-98 361.7 386 59.3
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.5e-95 354.0 387 58.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.0e-89 333.6 383 56.7
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.1e-87 327.8 389 56.0
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 2.4e-82 310.1 315 60.6
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.7e-80 303.9 391 51.4
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.5e-79 300.8 380 52.4
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.6e-78 296.2 388 51.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.1e-77 294.7 394 50.0
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.1e-77 294.7 390 50.5
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.3e-77 293.5 393 52.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 5.2e-77 292.4 393 52.4
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.0e-76 290.4 391 51.7
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.3e-75 287.7 392 49.0
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.9e-75 285.8 399 48.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 6.4e-75 285.4 392 47.4
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 8.3e-75 285.0 389 51.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 5.4e-74 282.3 390 50.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 9.2e-74 281.6 404 50.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.1e-73 280.4 394 49.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.6e-73 279.3 385 49.1
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.3e-72 277.7 390 50.3
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.5e-71 274.2 375 49.1
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-71 273.5 390 47.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.2e-70 271.2 398 48.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 2.1e-70 270.4 401 48.9
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.2e-68 264.6 410 47.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.5e-68 264.2 387 47.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.4e-68 263.1 391 47.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.4e-68 263.1 334 53.0
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.7e-67 260.8 398 46.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 6.4e-67 258.8 388 46.6
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 6.4e-67 258.8 392 48.5
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.1e-66 258.1 390 46.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.2e-66 256.5 388 48.2
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.4e-66 255.8 401 46.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 7.1e-66 255.4 390 44.1
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-65 254.2 394 45.4
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 2.1e-65 253.8 337 50.4
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.5e-65 253.1 410 44.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.6e-65 252.7 399 44.6
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.8e-65 251.9 398 45.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.3e-63 246.5 400 45.2
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 5.6e-63 245.7 384 47.4
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 8.1e-62 241.9 396 43.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.0e-61 239.6 397 44.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.5e-60 237.7 328 48.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.9e-60 235.0 357 46.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.2e-59 233.8 336 47.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.9e-59 233.4 336 47.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 3.8e-59 233.0 381 45.4
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.8e-59 233.0 357 45.9
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.8e-59 233.0 390 43.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-58 231.5 410 41.7
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.9e-58 230.7 336 47.3
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.4e-58 229.2 357 45.1
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 7.1e-58 228.8 408 43.4
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.2e-57 228.0 392 46.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 2.1e-57 227.3 399 43.4
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 6.0e-57 225.7 417 40.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.3e-56 224.6 408 43.1
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.1e-55 221.5 428 43.2
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-55 221.1 428 42.8
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 3.3e-55 219.9 390 44.1
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.3e-55 219.5 394 43.1
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.6e-54 216.5 345 46.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.8e-53 214.2 389 42.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.0e-52 210.7 382 43.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.6e-52 210.3 399 41.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.8e-51 206.5 370 40.8
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 4.9e-51 206.1 387 40.1
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.4e-51 205.3 324 46.6
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.1e-49 200.7 384 41.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.1e-49 200.7 396 41.4
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.7e-48 197.6 382 40.6
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.3e-48 197.2 392 42.3
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 3.0e-48 196.8 390 40.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.9e-48 196.4 395 40.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 1.9e-47 194.1 251 51.4
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.3e-46 191.4 328 42.1
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 6.2e-46 189.1 407 39.6
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.1e-45 188.3 403 39.7
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.5e-44 183.0 320 44.7
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.3e-43 181.4 381 38.3
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.2e-43 180.6 390 36.4
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 4.9e-43 179.5 397 39.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 6.4e-43 179.1 395 38.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 4.2e-42 176.4 296 45.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.1e-42 175.6 395 38.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.6e-41 174.5 398 38.4
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.1e-41 174.1 359 40.4
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 1.0e-40 171.8 378 41.0
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.3e-40 170.6 380 40.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.7e-40 168.7 413 34.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.1e-38 164.1 378 39.7
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.1e-38 164.1 375 40.5
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.1e-38 164.1 375 40.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.8e-38 163.7 268 45.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.8e-38 163.7 268 45.9
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 4.8e-38 162.9 380 38.9
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 8.1e-38 162.2 188 52.1
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.1e-37 161.8 375 39.2
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 3.1e-37 160.2 196 49.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.3e-37 159.5 396 35.6
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 6.9e-37 159.1 372 39.5
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 9.0e-37 158.7 284 43.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.5e-36 156.4 385 36.9
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 7.6e-36 155.6 378 40.5
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.9e-35 153.7 417 35.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.9e-35 153.7 324 42.3
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.8e-35 153.3 381 39.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 9.3e-34 148.7 384 34.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.7e-33 147.1 388 34.3
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.3e-32 144.8 374 36.4
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 3.9e-32 143.3 277 41.5
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.9e-32 143.3 357 34.7
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.4e-29 134.8 105 72.4
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.6e-25 121.3 192 46.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 2.2e-22 110.9 222 37.4
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 8.2e-22 109.0 150 48.0
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.1e-21 108.6 119 60.5
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.1e-21 107.1 198 37.4
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.4e-18 98.2 226 38.5
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-18 97.8 125 47.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-13 79.7 132 44.7
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-13 79.7 132 44.7
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-13 79.7 132 44.7
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-13 79.7 132 44.7
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.3e-13 79.7 132 44.7
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-12 77.8 132 43.9
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.9e-12 76.3 132 43.2
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.9e-12 76.3 340 30.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.7e-12 75.9 132 43.9
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-11 74.7 132 43.2
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-11 74.7 132 42.4
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.8e-08 64.7 104 37.5
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.5e-07 61.6 84 42.9
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.4e-07 60.1 119 41.2
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.7e-06 58.2 295 27.1
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 2.2e-06 57.8 49 55.1


User provided reference genes

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