Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.7e-179 630.9 353 100.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.1e-110 404.1 400 63.5
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.3e-86 322.8 347 60.5
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.1e-68 261.5 368 47.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 3.5e-67 259.6 373 47.7
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.9e-67 258.8 372 47.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-66 257.7 359 48.7
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 7.2e-65 251.9 346 49.1
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-64 249.2 344 48.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.7e-64 249.2 344 48.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-63 247.3 344 48.5
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 4.0e-63 246.1 335 53.1
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 6.7e-63 245.4 347 49.6
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.6e-62 243.4 349 49.3
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.3e-62 243.0 309 55.0
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.2e-61 240.4 331 50.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.8e-61 240.0 353 47.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.2e-61 238.4 356 47.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 2.0e-59 233.8 357 46.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.0e-59 233.8 338 47.9
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.7e-59 233.4 348 47.7
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.9e-59 232.3 356 45.5
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.0e-58 231.5 346 47.1
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-58 231.5 348 46.6
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.0e-58 231.5 338 47.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.7e-58 230.7 356 45.2
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-58 230.7 351 47.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.7e-58 230.7 355 45.4
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.5e-58 228.4 341 47.2
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.5e-57 226.9 311 49.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.2e-57 226.5 342 46.5
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.6e-56 224.2 341 46.3
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.7e-56 223.4 340 45.6
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.0e-55 221.5 375 43.7
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.3e-55 220.3 345 46.1
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.0e-55 219.9 362 46.1
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 8.8e-55 218.4 424 41.7
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.0e-54 217.2 318 47.5
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 4.4e-54 216.1 356 43.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 4.4e-54 216.1 356 43.8
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.3e-53 214.5 340 46.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-53 214.2 287 49.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.2e-53 213.8 355 44.2
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 2.8e-53 213.4 345 45.5
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 7.0e-52 208.8 366 45.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 9.1e-52 208.4 356 44.1
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.2e-51 208.0 333 45.9
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.6e-51 207.6 372 42.5
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 3.5e-51 206.5 382 42.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 4.5e-51 206.1 347 45.0
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.0e-50 204.9 359 42.9
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 2.3e-50 203.8 297 45.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.9e-50 203.4 377 42.7
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.8e-50 203.0 395 43.3
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 6.5e-50 202.2 329 46.2
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 8.6e-50 201.8 322 45.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.5e-49 200.3 286 46.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.5e-49 200.3 286 46.2
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 5.5e-49 199.1 286 45.8
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.5e-49 198.4 342 43.0
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-48 197.6 313 44.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 2.8e-48 196.8 330 44.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 3.6e-48 196.4 350 43.4
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 8.0e-48 195.3 249 51.8
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.8e-47 194.1 365 43.0
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.3e-47 193.7 349 42.4
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 8.9e-47 191.8 318 43.4
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.2e-46 191.4 341 42.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.2e-46 191.4 345 43.8
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.0e-46 190.7 345 44.1
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.4e-46 189.9 295 45.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.4e-46 189.5 342 42.4
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.8e-45 186.8 358 41.3
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 4.9e-45 186.0 395 41.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 8.3e-45 185.3 356 41.0
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.8e-44 184.1 371 42.0
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 2.4e-44 183.7 432 38.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 3.1e-44 183.3 338 40.2
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.2e-43 181.4 343 40.5
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.0e-43 180.6 360 39.2
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.7e-43 180.3 338 42.9
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.1e-40 170.6 352 40.6
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 6.1e-40 169.1 344 39.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.8e-39 167.5 360 39.2
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 5.2e-39 166.0 305 42.3
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.5e-38 164.5 306 42.8
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.5e-38 164.5 401 38.9
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 3.4e-38 163.3 430 35.3
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 4.4e-38 162.9 344 39.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 7.5e-38 162.2 337 38.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 3.7e-37 159.8 327 40.4
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 6.4e-37 159.1 327 39.4
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.8e-36 157.5 374 38.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 7.0e-36 155.6 349 37.8
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 9.2e-36 155.2 430 35.8
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.2e-35 154.8 335 38.5
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.6e-35 154.5 285 42.8
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.0e-35 154.1 434 33.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.0e-35 154.1 441 35.6
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 2.0e-35 154.1 423 35.0
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 2.7e-35 153.7 358 38.0
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.7e-35 153.7 425 34.1
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.0e-34 151.8 380 35.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.3e-34 150.6 332 39.5
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 8.6e-34 148.7 433 32.3
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 8.6e-34 148.7 248 47.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.9e-33 147.5 387 36.7
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 2.5e-33 147.1 354 35.9
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.2e-32 144.8 334 37.1
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.8e-32 143.7 312 40.1
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.6e-32 143.3 243 43.6
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.3e-31 140.6 372 36.6
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 4.0e-31 139.8 315 40.0
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.4e-30 136.7 329 38.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.8e-30 136.0 129 61.2
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.7e-29 134.4 387 34.4
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.4e-28 131.3 251 42.6
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 2.7e-27 127.1 285 35.4
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.0e-27 125.9 309 37.2
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.7e-26 124.4 270 40.4
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 6.6e-26 122.5 325 36.3
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-24 117.5 360 31.7
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.8e-24 117.1 370 34.3
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.0e-23 113.2 325 34.2
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 5.2e-23 112.8 372 34.1
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.2e-20 103.6 171 47.4
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.1e-16 89.0 102 54.9
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.4e-15 88.2 76 61.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.4e-13 79.3 73 58.9
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 6.4e-13 79.3 319 30.4
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 8.4e-13 79.0 96 49.0
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 9.2e-12 75.5 138 34.8
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.1e-09 68.6 130 38.5
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-09 68.2 200 34.5
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.1e-08 64.3 63 50.8
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.6e-08 63.5 63 50.8
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.2e-08 62.8 67 49.3
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 8.1e-08 62.4 239 33.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-07 61.2 66 50.0
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.0e-07 60.1 59 57.6
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 9.9e-06 55.5 195 32.3


User provided reference genes

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