Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0464G2000 Vigna mungo HOM05D002286 ORTHO05D437684 4.4e-78 294.7 161 100.0
Phvul.010G152700 Phaseolus vulgaris HOM05D002286 ORTHO05D002468 1.7e-24 116.7 121 57.9
Glyma.08G208700 Glycine max HOM05D002286 ORTHO05D002468 1.1e-23 114.0 125 63.2
VMungo0331G1867 Vigna mungo HOM05D002286 ORTHO05D002468 3.1e-23 112.5 123 57.7
VMungo1309G0583 Vigna mungo HOM05D002286 ORTHO05D437909 2.6e-22 109.4 67 73.1
CiPaw.01G242400 Carya illinoinensis HOM05D002286 ORTHO05D002468 1.7e-21 106.7 122 52.5
Ca_07171_v3 Cicer arietinum L. HOM05D002286 ORTHO05D002468 3.8e-21 105.5 143 48.3
Cfa002033 Carpinus fangiana HOM05D002286 ORTHO05D002468 1.9e-20 103.2 122 51.6
Haze_16485 Corylus avellana HOM05D002286 ORTHO05D002468 5.5e-20 101.7 122 50.8
Psat4g172720 Pisum sativum HOM05D002286 ORTHO05D002468 1.2e-19 100.5 135 46.7
Lalb_Chr25g0279561 Lupinus albus HOM05D002286 ORTHO05D002468 2.7e-19 99.4 125 49.6
RcHm_v2.0_Chr2g0137081 Rosa chinensis HOM05D002286 ORTHO05D002468 2.7e-19 99.4 134 46.3
Prupe.3G077200 Prunus persica HOM05D002286 ORTHO05D002468 3.6e-19 99.0 136 43.4
Medtr4g011600 Medicago truncatula HOM05D002286 ORTHO05D002468 1.0e-18 97.4 132 47.0
Manes.11G049600 Manihot esculenta HOM05D002286 ORTHO05D002468 2.3e-18 96.3 135 44.4
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 3.0e-18 95.9 139 45.3
PGR031G1478 Punica granatum HOM05D002286 ORTHO05D002468 3.9e-18 95.5 130 44.6
TPR.G38628 Trifolium pratense HOM05D002286 ORTHO05D002468 3.9e-18 95.5 139 43.9
TAR625G1367 Trochodendron aralioides HOM05D002286 ORTHO05D002468 5.1e-18 95.1 128 45.3
Eucgr.J03028 Eucalyptus grandis HOM05D002286 ORTHO05D002468 6.7e-18 94.7 136 42.6
QL05p026809 Quercus lobata HOM05D002286 ORTHO05D002468 6.7e-18 94.7 135 46.7
Cpa.g.sc10.199 Carica papaya HOM05D002286 ORTHO05D002468 1.5e-17 93.6 127 45.7
Thecc.06G077800 Theobroma cacao HOM05D002286 ORTHO05D002468 2.6e-17 92.8 120 44.2
CsaV3_7G032820 Cucumis sativus L. HOM05D002286 ORTHO05D002468 3.3e-17 92.4 126 45.2
PSO386G0049 Papaver somniferum HOM05D002286 ORTHO05D002468 3.3e-17 92.4 143 42.7
Ciclev10025542m.g Citrus clementina HOM05D002286 ORTHO05D002468 4.4e-17 92.0 140 40.7
MELO3C023385.2 Cucumis melo HOM05D002286 ORTHO05D002468 4.4e-17 92.0 126 45.2
Gohir.A10G078000 Gossypium hirsutum HOM05D002286 ORTHO05D002468 4.4e-17 92.0 120 46.7
Gohir.D10G073600 Gossypium hirsutum HOM05D002286 ORTHO05D002468 4.4e-17 92.0 120 46.7
Gorai.011G079400 Gossypium raimondii HOM05D002286 ORTHO05D002468 4.4e-17 92.0 120 46.7
HanXRQChr16g0500611 Helianthus annuus HOM05D002286 ORTHO05D002468 5.7e-17 91.7 135 40.7
Duzib235G0902 Durio zibethinus HOM05D002286 ORTHO05D002468 7.4e-17 91.3 120 45.0
arahy.Tifrunner.gnm1.ann1.YICS0E Arachis hypogaea HOM05D002286 ORTHO05D002468 9.7e-17 90.9 136 43.4
Aqoxy7G01952 Aquilegia oxysepala HOM05D002286 ORTHO05D002468 1.3e-16 90.5 129 45.0
CSS0042482 Camellia sinensis var. sinensis HOM05D002286 ORTHO05D002468 1.3e-16 90.5 137 43.8
Lj3g0015754 Lotus japonicus HOM05D002286 ORTHO05D002468 1.3e-16 90.5 125 48.0
Manes.11G049700 Manihot esculenta HOM05D002286 ORTHO05D002468 1.3e-16 90.5 135 43.0
Lsat_1_v5_gn_4_103980 Lactuca sativa HOM05D002286 ORTHO05D002468 2.8e-16 89.4 132 40.2
Atru.chr1.3168 Acer truncatum HOM05D002286 ORTHO05D002468 3.7e-16 89.0 131 43.5
arahy.Tifrunner.gnm1.ann1.WPDD67 Arachis hypogaea HOM05D002286 ORTHO05D002468 3.7e-16 89.0 132 41.7
ECA232G5015 Erigeron canadensis HOM05D002286 ORTHO05D002468 8.2e-16 87.8 132 40.2
PSO724G0501 Papaver somniferum HOM05D002286 ORTHO05D002468 8.2e-16 87.8 145 42.1
Rhsim12G0195100 Rhododendron simsii HOM05D002286 ORTHO05D002468 8.2e-16 87.8 138 39.1
Hma1.2p1_3026F.1_g331810 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 1.1e-15 87.4 130 42.3
Nitab4.5_0000410g0320 Nicotiana tabacum HOM05D002286 ORTHO05D002468 1.1e-15 87.4 139 41.7
CSS0038238 Camellia sinensis var. sinensis HOM05D002286 ORTHO05D002468 1.4e-15 87.0 137 43.1
A07p45330 Brassica napus HOM05D002286 ORTHO05D002468 1.8e-15 86.7 127 42.5
BraA07t32037Z Brassica rapa HOM05D002286 ORTHO05D002468 1.8e-15 86.7 127 42.5
Nitab4.5_0004817g0020 Nicotiana tabacum HOM05D002286 ORTHO05D002468 1.8e-15 86.7 139 41.7
Solyc03g119930.1 Solanum lycopersicum HOM05D002286 ORTHO05D002468 1.8e-15 86.7 134 44.0
COL.COLO4_12856 Corchorus olitorius HOM05D002286 ORTHO05D002468 2.4e-15 86.3 123 41.5
DCAR_002843 Daucus carota HOM05D002286 ORTHO05D002468 2.4e-15 86.3 122 41.8
Aa31LG4G590 Aethionema arabicum HOM05D002286 ORTHO05D002468 3.1e-15 85.9 123 42.3
Migut.D01041 Erythranthe guttata HOM05D002286 ORTHO05D002468 3.1e-15 85.9 125 40.8
MSTRG.4724 Avicennia marina HOM05D002286 ORTHO05D002468 4.1e-15 85.5 125 44.0
CARHR291220 Cardamine hirsuta HOM05D002286 ORTHO05D002468 4.1e-15 85.5 126 41.3
Hma1.2p1_0317F.1_g123320 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 4.1e-15 85.5 128 42.2
ClCG09G002510 Citrullus lanatus HOM05D002286 ORTHO05D002468 5.3e-15 85.1 126 42.9
BcaC08g47578 Brassica carinata HOM05D002286 ORTHO05D002468 6.9e-15 84.7 127 42.5
C06p54180 Brassica napus HOM05D002286 ORTHO05D002468 6.9e-15 84.7 127 42.5
BolC6t40430H Brassica oleracea HOM05D002286 ORTHO05D002468 6.9e-15 84.7 127 42.5
RhsimUnG0009500 Rhododendron simsii HOM05D002286 ORTHO05D002468 6.9e-15 84.7 140 44.3
Sopen03g038810 Solanum pennellii HOM05D002286 ORTHO05D002468 9.1e-15 84.3 141 39.7
Lj8A335T44 Lonicera japonica HOM05D002286 ORTHO05D002468 1.2e-14 84.0 134 40.3
CAN.G438.97 Capsicum annuum HOM05D002286 ORTHO05D002468 1.5e-14 83.6 134 43.3
THA.LOC104812482 Tarenaya hassleriana HOM05D002286 ORTHO05D002468 1.5e-14 83.6 124 41.9
Peaxi162Scf00015g00058 Petunia axillaris HOM05D002286 ORTHO05D002468 2.0e-14 83.2 141 41.1
PGSC0003DMG400005760 Solanum tuberosum HOM05D002286 ORTHO05D002468 4.5e-14 82.0 133 46.6
CDE07G0769 Ceratophyllum demersum HOM05D002286 ORTHO05D002468 7.7e-14 81.3 120 41.7
TWI12G0048 Tripterygium wilfordii HOM05D002286 ORTHO05D002468 7.7e-14 81.3 135 40.0
AL2G41190 Arabidopsis lyrata HOM05D002286 ORTHO05D002468 1.0e-13 80.9 125 40.0
Carub.0002s0429 Capsella rubella HOM05D002286 ORTHO05D002468 1.3e-13 80.5 124 41.1
Cc04_g03750 Coffea canephora HOM05D002286 ORTHO05D002468 1.3e-13 80.5 130 41.5
BcaB02g08694 Brassica carinata HOM05D002286 ORTHO05D002468 2.2e-13 79.7 122 48.4
Os01g0645900 Oryza sativa ssp. japonica HOM05D002286 ORTHO05D002468 3.8e-13 79.0 124 43.5
Sed0007547 Sechium edule HOM05D002286 ORTHO05D002468 5.0e-13 78.6 128 48.4
unitig_62.g23775 Utricularia gibba HOM05D002980 ORTHO05D003421 6.5e-13 78.2 124 41.1
Sp5g35500 Schrenkiella parvula HOM05D002286 ORTHO05D002468 1.9e-12 76.6 125 48.0
AT1G80310 Arabidopsis thaliana HOM05D002286 ORTHO05D002468 3.2e-12 75.9 125 44.0
Lj5C65T9 Lonicera japonica HOM05D002286 ORTHO05D002468 3.2e-12 75.9 128 37.5
ClCG08G012850 Citrullus lanatus HOM05D002286 ORTHO05D002468 1.2e-11 73.9 124 36.3
SGA_v2.0_scaffold279G46823 Striga asiatica HOM05D002286 ORTHO05D002468 1.2e-11 73.9 121 40.5
CsaV3_2G031590 Cucumis sativus L. HOM05D002286 ORTHO05D002468 2.7e-11 72.8 127 33.9
Oeu001147.3 Olea europaea HOM05D002286 ORTHO05D002468 2.7e-11 72.8 128 39.1
SalBow2G2293 Salvia bowleyana HOM05D002286 ORTHO05D002468 2.7e-11 72.8 123 38.2
Zm00001eb158530 Zea mays HOM05D002286 ORTHO05D002468 1.4e-10 70.5 124 40.3
MELO3C011210.2 Cucumis melo HOM05D002286 ORTHO05D002468 1.8e-10 70.1 126 31.0
Thhalv10019779m.g Eutrema salsugineum HOM05D002286 ORTHO05D002468 3.0e-10 69.3 126 46.0
Ciclev10010241m.g Citrus clementina HOM05D002286 ORTHO05D002468 5.2e-10 68.6 121 36.4
Gohir.A06G048400 Gossypium hirsutum HOM05D002286 ORTHO05D002468 5.2e-10 68.6 133 34.6
Gohir.D06G048400 Gossypium hirsutum HOM05D002286 ORTHO05D002468 5.2e-10 68.6 133 33.8
DCAR_006259 Daucus carota HOM05D002286 ORTHO05D002468 6.7e-10 68.2 123 33.3
A01p08100 Brassica napus HOM05D002286 ORTHO05D002468 8.8e-10 67.8 119 41.2
Gohir.A06G048500 Gossypium hirsutum HOM05D002286 ORTHO05D002468 1.1e-09 67.4 133 33.8
Gorai.010G054200 Gossypium raimondii HOM05D002286 ORTHO05D002468 1.1e-09 67.4 133 33.1
Thecc.09G143500 Theobroma cacao HOM05D002286 ORTHO05D002468 1.1e-09 67.4 121 34.7
AL7G51770 Arabidopsis lyrata HOM05D002286 ORTHO05D002468 1.5e-09 67.0 129 42.6
AT2G25680 Arabidopsis thaliana HOM05D002286 ORTHO05D002468 2.0e-09 66.6 123 43.1
BcaB08g35207 Brassica carinata HOM05D002286 ORTHO05D002468 2.0e-09 66.6 122 43.4
C08p38480 Brassica napus HOM05D002286 ORTHO05D002468 2.0e-09 66.6 117 40.2
BraA01t00756Z Brassica rapa HOM05D002286 ORTHO05D002468 2.0e-09 66.6 119 41.2
PSO135G0873 Papaver somniferum HOM05D002286 ORTHO05D002468 2.0e-09 66.6 133 33.1
Sed0017158 Sechium edule HOM05D002286 ORTHO05D002468 2.0e-09 66.6 128 33.6
Thhalv10000159m.g Eutrema salsugineum HOM05D002286 ORTHO05D002468 2.6e-09 66.2 123 40.7
BcaC09g51780 Brassica carinata HOM05D002286 ORTHO05D002468 3.3e-09 65.9 119 41.2
C01p09070 Brassica napus HOM05D002286 ORTHO05D002468 3.3e-09 65.9 119 41.2
BolC1t00898H Brassica oleracea HOM05D002286 ORTHO05D002468 3.3e-09 65.9 119 41.2
Psat6g031200 Pisum sativum HOM05D002286 ORTHO05D002468 3.3e-09 65.9 134 32.1
THA.LOC104819892 Tarenaya hassleriana HOM05D002286 ORTHO05D002468 3.3e-09 65.9 124 35.5
BolC8t51420H Brassica oleracea HOM05D002286 ORTHO05D002468 4.4e-09 65.5 119 40.3
CARHR115570 Cardamine hirsuta HOM05D002286 ORTHO05D002468 4.4e-09 65.5 125 41.6
Nn1g07809 Nelumbo nucifera HOM05D002286 ORTHO05D002468 5.7e-09 65.1 126 34.9
PSO782G1481 Papaver somniferum HOM05D002286 ORTHO05D002468 7.4e-09 64.7 132 31.8
Atru.chr7.2315 Acer truncatum HOM05D002286 ORTHO05D002468 9.7e-09 64.3 126 34.9
PSO063G4464 Papaver somniferum HOM05D002286 ORTHO05D002468 9.7e-09 64.3 132 31.8
Sabra06G0192500 Salix brachista HOM05D002286 ORTHO05D002468 9.7e-09 64.3 124 33.9
Carub.0004s0547 Capsella rubella HOM05D002286 ORTHO05D002468 1.3e-08 63.9 126 42.9
Cpa.g.sc91.3 Carica papaya HOM05D002286 ORTHO05D002468 1.3e-08 63.9 121 34.7
Migut.A00264 Erythranthe guttata HOM05D002286 ORTHO05D002468 1.3e-08 63.9 136 30.1
Eucgr.A01696 Eucalyptus grandis HOM05D002286 ORTHO05D002468 1.3e-08 63.9 127 33.1
A09p55500 Brassica napus HOM05D002286 ORTHO05D002468 1.7e-08 63.5 122 42.6
Migut.L00408 Erythranthe guttata HOM05D002286 ORTHO05D002468 1.7e-08 63.5 136 30.1
Medtr1g010270 Medicago truncatula HOM05D002286 ORTHO05D002468 1.7e-08 63.5 133 30.8
PGSC0003DMG400011000 Solanum tuberosum HOM05D002286 ORTHO05D002468 2.2e-08 63.2 121 32.2
BcaC07g40850 Brassica carinata HOM05D002286 ORTHO05D002468 2.8e-08 62.8 116 40.5
CAN.G324.1 Capsicum annuum HOM05D002286 ORTHO05D002468 4.8e-08 62.0 121 31.4
Hma1.2p1_0140F.1_g063860 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 4.8e-08 62.0 124 33.1
Hma1.2p1_0175F.1_g077326 Hydrangea macrophylla HOM05D002286 ORTHO05D002468 4.8e-08 62.0 124 33.1
Nn1g07804 Nelumbo nucifera HOM05D002286 ORTHO05D002468 4.8e-08 62.0 125 33.6
TAR383G0042 Trochodendron aralioides HOM05D002286 ORTHO05D002468 4.8e-08 62.0 125 34.4
AL4G17280 Arabidopsis lyrata HOM05D002286 ORTHO05D002468 6.3e-08 61.6 123 39.8
Duzib168G1154 Durio zibethinus HOM05D002286 ORTHO05D002468 6.3e-08 61.6 121 33.9
CAN.G588.48 Capsicum annuum HOM05D002286 ORTHO05D002468 8.2e-08 61.2 121 30.6
COL.COLO4_24074 Corchorus olitorius HOM05D002286 ORTHO05D002468 8.2e-08 61.2 128 34.4
Sabra18G0035900 Salix brachista HOM05D002286 ORTHO05D002468 8.2e-08 61.2 124 32.3
TPR.G20090 Trifolium pratense HOM05D002286 ORTHO05D002468 8.2e-08 61.2 133 29.3
BcaNung06649 Brassica carinata HOM05D002286 ORTHO05D002468 1.1e-07 60.8 118 38.1
BraA09t40952Z Brassica rapa HOM05D002286 ORTHO05D002468 1.1e-07 60.8 121 40.5
CANSAT54G0703 Cannabis sativa HOM05D002286 ORTHO05D002468 1.4e-07 60.5 130 32.3
Eucgr.A01693 Eucalyptus grandis HOM05D002286 ORTHO05D002468 1.4e-07 60.5 117 34.2
Rhsim07G0121400 Rhododendron simsii HOM05D002286 ORTHO05D002468 1.4e-07 60.5 136 31.6
CSS0006489 Camellia sinensis var. sinensis HOM05D002286 ORTHO05D002468 1.8e-07 60.1 125 37.6
Duzib150G1317 Durio zibethinus HOM05D002286 ORTHO05D002468 1.8e-07 60.1 121 31.4
Sp4g05290 Schrenkiella parvula HOM05D002286 ORTHO05D002468 1.8e-07 60.1 122 38.5
Lj8C608T5 Lonicera japonica HOM05D002286 ORTHO05D002468 2.4e-07 59.7 128 31.2
vmacro05454 Vaccinium macrocarpon HOM05D002286 ORTHO05D002468 2.4e-07 59.7 133 31.6
Gohir.D07G029700 Gossypium hirsutum HOM05D002286 ORTHO05D002468 3.1e-07 59.3 123 30.9
Lj1g0009540 Lotus japonicus HOM05D002286 ORTHO05D002468 4.1e-07 58.9 131 32.1
Potri.006G245900 Populus trichocarpa HOM05D002286 ORTHO05D002468 4.1e-07 58.9 126 30.2
Sopen10g034120 Solanum pennellii HOM05D002286 ORTHO05D002468 4.1e-07 58.9 126 30.2
Rhsim07G0121700 Rhododendron simsii HOM05D002286 ORTHO05D002468 5.3e-07 58.5 136 30.9
Gohir.A07G025900 Gossypium hirsutum HOM05D002286 ORTHO05D002468 7.0e-07 58.2 123 30.9
Potri.006G246000 Populus trichocarpa HOM05D002286 ORTHO05D002468 7.0e-07 58.2 124 31.5
Sabra06G0192400 Salix brachista HOM05D002286 ORTHO05D002468 7.0e-07 58.2 124 31.5
Gorai.001G030900 Gossypium raimondii HOM05D002286 ORTHO05D002468 9.1e-07 57.8 123 30.9
Nn3g19942 Nelumbo nucifera HOM05D002286 ORTHO05D002468 9.1e-07 57.8 145 31.0
Gorai.001G031000 Gossypium raimondii HOM05D002286 ORTHO05D002468 1.2e-06 57.4 123 30.1
Phvul.001G056100 Phaseolus vulgaris HOM05D002286 ORTHO05D002468 1.2e-06 57.4 129 30.2
SEGI_21023 Sequoiadendron giganteum HOM05D002286 ORTHO05D002468 1.2e-06 57.4 134 29.1
SGA_v2.0_scaffold27G11506 Striga asiatica HOM05D002286 ORTHO05D002468 1.2e-06 57.4 125 30.4
CiPaw.08G016400 Carya illinoinensis HOM05D002286 ORTHO05D002468 1.6e-06 57.0 131 29.0
Gohir.D07G029800 Gossypium hirsutum HOM05D002286 ORTHO05D002468 1.6e-06 57.0 123 30.1
Lj8C608T4 Lonicera japonica HOM05D002286 ORTHO05D002468 1.6e-06 57.0 122 31.1
RcHm_v2.0_Chr6g0312651 Rosa chinensis HOM05D002286 ORTHO05D002468 1.6e-06 57.0 124 30.6
Solyc10g084680.1 Solanum lycopersicum HOM05D002286 ORTHO05D002468 1.6e-06 57.0 129 29.5
Haze_21637 Corylus avellana HOM05D002286 ORTHO05D002468 2.0e-06 56.6 129 30.2
FvH4_2g30230 Fragaria vesca HOM05D002286 ORTHO05D002468 2.0e-06 56.6 121 29.8
FAN24G2849 Fragaria x ananassa HOM05D002286 ORTHO05D002468 2.0e-06 56.6 121 29.8
Oeu045169.1 Olea europaea HOM05D002286 ORTHO05D002468 2.0e-06 56.6 124 29.0
Peaxi162Scf01093g00002 Petunia axillaris HOM05D002286 ORTHO05D002468 2.0e-06 56.6 124 29.0
Medtr3g464210 Medicago truncatula HOM05D002286 ORTHO05D002468 2.6e-06 56.2 145 26.9
SalBow4G0941 Salvia bowleyana HOM05D002286 ORTHO05D002468 2.6e-06 56.2 126 30.2
Eucgr.A01695 Eucalyptus grandis HOM05D002286 ORTHO05D002468 3.5e-06 55.8 127 29.9
HPP92_009791 Vanilla planifolia HOM05D002286 ORTHO05D002468 3.5e-06 55.8 120 33.3
Aqoxy1G03626 Aquilegia oxysepala HOM05D002286 ORTHO05D002468 4.5e-06 55.5 119 33.6
Haze_21634 Corylus avellana HOM05D002286 ORTHO05D002468 4.5e-06 55.5 132 33.3
Eucgr.C02872 Eucalyptus grandis HOM05D002286 ORTHO05D002468 4.5e-06 55.5 127 29.1
MSTRG.25881 Avicennia marina HOM05D002286 ORTHO05D002468 5.9e-06 55.1 128 32.0
EL10Ac6g15127 Beta vulgaris HOM05D002286 ORTHO05D002468 5.9e-06 55.1 123 30.9
Cfa013222 Carpinus fangiana HOM05D002286 ORTHO05D002468 5.9e-06 55.1 129 28.7
Medtr1g010210 Medicago truncatula HOM05D002286 ORTHO05D002468 5.9e-06 55.1 134 30.6
QL12p031132 Quercus lobata HOM05D002286 ORTHO05D002468 5.9e-06 55.1 135 29.6
Sc09g0008890 Simmondsia chinensis HOM05D002286 ORTHO05D002468 5.9e-06 55.1 130 32.3
Aqoxy7G01804 Aquilegia oxysepala HOM05D002286 ORTHO05D002468 7.7e-06 54.7 119 32.8
FAN20G1120 Fragaria x ananassa HOM05D002286 ORTHO05D002468 7.7e-06 54.7 130 30.0
FAN20G3014 Fragaria x ananassa HOM05D002286 ORTHO05D002468 7.7e-06 54.7 130 30.0
Peaxi162Scf00003g03332 Petunia axillaris HOM05D002286 ORTHO05D002468 7.7e-06 54.7 124 28.2


User provided reference genes

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