Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.8e-75 285.8 140 100.0
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.7e-55 218.8 140 81.4
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 1.3e-54 216.5 140 80.0
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.0e-54 215.3 140 79.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 3.3e-53 211.8 140 78.6
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 4.3e-53 211.5 140 77.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 4.3e-53 211.5 140 77.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.5e-53 210.3 140 77.9
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.1e-51 206.8 140 75.7
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.5e-50 203.0 138 74.6
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 3.4e-50 201.8 140 75.0
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 4.9e-49 198.0 137 73.0
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.1e-45 186.8 140 67.9
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.1e-45 186.8 139 66.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.5e-45 186.4 140 68.6
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.9e-45 186.0 140 68.6
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 2.5e-45 185.7 140 65.7
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 9.6e-45 183.7 140 65.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 9.6e-45 183.7 140 67.1
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.8e-44 182.2 140 66.4
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 6.2e-44 181.0 134 67.2
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.2e-44 181.0 138 64.5
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 6.2e-44 181.0 138 65.2
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 8.1e-44 180.6 140 65.0
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 8.1e-44 180.6 140 67.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.1e-43 180.3 138 65.2
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.4e-43 179.9 138 64.5
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.8e-43 179.5 138 65.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.4e-43 179.1 140 64.3
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.4e-43 179.1 140 65.7
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.4e-43 179.1 138 64.5
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 3.1e-43 178.7 136 66.2
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.1e-43 178.7 140 63.6
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 4.0e-43 178.3 138 64.5
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.0e-43 178.3 138 64.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 6.9e-43 177.6 139 64.0
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 6.9e-43 177.6 140 65.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 6.9e-43 177.6 140 65.7
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 8.9e-43 177.2 138 63.8
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 2.0e-42 176.0 140 64.3
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 2.6e-42 175.6 140 63.6
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.6e-42 175.6 135 65.2
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 4.4e-42 174.9 138 63.0
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 5.8e-42 174.5 140 64.3
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 9.9e-42 173.7 140 61.4
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 9.9e-42 173.7 135 63.0
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.3e-41 173.3 140 64.3
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.9e-41 172.2 138 62.3
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.9e-41 172.2 135 62.2
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.8e-41 171.8 136 64.0
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 4.9e-41 171.4 136 64.0
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 8.4e-41 170.6 140 61.4
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.4e-40 169.9 136 62.5
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.4e-40 169.9 140 61.4
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.4e-40 169.1 140 62.9
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 2.4e-40 169.1 140 61.4
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.4e-40 169.1 135 61.5
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 3.2e-40 168.7 136 62.5
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 4.2e-40 168.3 135 63.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 5.4e-40 167.9 135 63.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 7.1e-40 167.5 139 60.4
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 7.1e-40 167.5 140 60.7
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 9.3e-40 167.2 140 61.4
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 9.3e-40 167.2 136 61.8
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.2e-39 166.8 135 58.5
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.2e-39 166.8 138 60.9
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.6e-39 166.4 135 61.5
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.6e-39 166.4 140 60.7
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.7e-39 165.6 135 59.3
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 7.8e-39 164.1 137 60.6
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.7e-38 162.9 136 60.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 2.3e-38 162.5 135 59.3
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.3e-38 162.5 135 60.7
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 3.0e-38 162.2 135 59.3
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.0e-38 162.2 135 60.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 3.9e-38 161.8 135 59.3
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 3.9e-38 161.8 135 59.3
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 5.1e-38 161.4 135 60.7
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 6.6e-38 161.0 135 60.0
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 8.7e-38 160.6 135 59.3
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 8.7e-38 160.6 135 58.5
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 8.7e-38 160.6 137 59.1
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.1e-37 160.2 135 59.3
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.1e-37 160.2 135 60.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.5e-37 159.8 140 57.9
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.5e-37 159.1 132 59.8
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.3e-37 158.3 137 57.7
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 4.3e-37 158.3 135 57.0
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 4.3e-37 158.3 139 57.6
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 5.6e-37 157.9 140 56.4
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 6.2e-36 154.5 140 55.7
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 8.1e-36 154.1 135 56.3
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 8.1e-36 154.1 135 56.3
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.1e-35 153.7 139 58.3
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.2e-34 150.2 139 56.8
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.0e-34 149.4 135 54.8
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 5.8e-34 147.9 129 65.9
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.2e-33 146.0 135 54.1
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.2e-33 146.0 134 53.7
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.6e-31 139.8 134 53.7
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 3.5e-31 138.7 133 53.4
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.9e-31 137.5 130 54.6
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.0e-30 137.1 126 54.0
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 1.8e-30 136.3 125 54.4
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.3e-30 136.0 179 43.6
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 1.1e-29 133.7 132 50.0
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-29 133.3 130 53.8
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 5.6e-29 131.3 110 58.2
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.6e-28 128.6 110 58.2
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.4e-27 126.7 131 48.9
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 6.9e-27 124.4 125 53.6
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.5e-26 121.7 110 56.4
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 8.4e-25 117.5 130 47.7
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.4e-24 116.7 131 48.9
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 3.2e-24 115.5 56 92.9
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.2e-23 113.6 97 62.9
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.1e-23 112.8 131 45.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.9e-21 106.3 60 80.0
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.9e-21 106.3 112 50.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.6e-21 104.8 59 79.7
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 5.6e-21 104.8 136 39.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 3.7e-20 102.1 94 58.5
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 8.1e-20 100.9 99 55.6
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 8.1e-20 100.9 99 55.6
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 6.9e-19 97.8 91 54.9
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.0e-18 96.3 94 57.4
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 7.6e-18 94.4 98 48.0
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 3.8e-17 92.0 99 55.6
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 8.4e-17 90.9 136 39.0
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.7e-15 85.9 54 75.9
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 3.5e-15 85.5 157 32.5
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.0e-14 84.0 102 47.1
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.5e-13 80.1 60 61.7
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.1e-11 73.9 48 75.0
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.6e-07 58.5 55 50.9
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.3e-06 56.2 48 56.2


User provided reference genes

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