Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 0.0e+00 1171.4 697 100.0
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 9.2e-298 1026.5 704 89.2
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 9.9e-284 979.9 703 80.9
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.3e-278 963.0 702 79.8
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.7e-238 829.7 706 75.4
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.1e-237 825.1 708 70.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 6.9e-237 824.3 700 73.1
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 3.3e-231 805.4 708 70.9
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 2.4e-229 799.3 698 68.3
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 5.9e-228 794.7 708 73.3
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 5.0e-227 791.6 703 73.0
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.1e-210 737.3 711 64.7
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.4e-207 725.7 708 63.8
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.6e-201 706.8 711 61.7
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.4e-200 703.7 713 62.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 3.4e-199 699.1 711 62.0
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 3.4e-199 699.1 712 62.2
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 6.4e-198 694.9 719 61.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.4e-197 693.0 713 61.6
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-197 693.0 706 63.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-197 693.0 717 62.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 5.4e-197 691.8 709 61.2
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 3.5e-196 689.1 715 61.3
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 7.8e-196 688.0 738 61.7
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.3e-195 687.2 726 61.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.7e-195 686.8 711 61.9
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 6.6e-195 684.9 718 60.7
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.5e-194 682.9 759 57.7
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 4.7e-193 678.7 703 60.7
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 6.2e-193 678.3 714 60.1
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.8e-192 676.8 720 60.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.8e-192 674.9 701 60.9
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.7e-190 669.1 705 60.3
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 3.7e-190 669.1 712 61.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 6.4e-190 668.3 712 59.7
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.4e-189 665.2 698 60.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 9.2e-189 664.5 712 59.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 6.0e-188 661.8 706 59.1
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.8e-188 661.4 717 60.8
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.6e-186 655.2 742 56.1
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 1.6e-185 653.7 711 59.9
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.6e-185 653.7 708 58.3
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 4.7e-185 652.1 727 57.9
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 8.1e-185 651.4 703 59.2
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.9e-184 647.9 592 67.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 5.8e-183 645.2 589 66.7
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 4.9e-182 642.1 716 57.1
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.4e-181 639.8 710 58.2
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 1.0e-179 634.4 723 56.6
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.1e-178 630.9 731 57.5
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.5e-178 629.8 709 59.7
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 3.3e-178 629.4 725 56.4
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.8e-177 626.3 732 58.3
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.7e-177 625.5 715 56.6
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 6.2e-177 625.2 719 56.3
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 4.4e-175 619.0 714 55.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 8.4e-174 614.8 774 53.9
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 3.2e-173 612.8 712 58.3
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 7.1e-173 611.7 739 57.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.6e-172 610.5 724 55.0
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 1.6e-172 610.5 724 55.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.1e-172 610.1 723 55.7
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.7e-171 607.1 724 54.4
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.1e-170 604.4 696 56.2
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.9e-170 603.6 728 59.1
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.5e-170 603.2 747 53.5
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 4.3e-170 602.4 722 55.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 7.3e-170 601.7 720 59.6
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.3e-170 601.7 731 56.5
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 9.6e-170 601.3 724 54.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.8e-168 597.0 723 55.5
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.4e-168 596.7 654 59.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 4.0e-168 595.9 715 55.4
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.5e-167 594.0 715 55.4
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.2e-166 590.1 713 54.4
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 4.9e-166 589.0 712 60.1
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.4e-165 587.4 713 55.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.7e-163 580.5 701 54.5
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.1e-162 577.8 731 56.6
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-162 577.4 731 58.4
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 5.6e-162 575.5 731 58.3
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.1e-161 573.5 731 58.1
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 3.6e-161 572.8 719 53.5
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 3.6e-161 572.8 729 57.9
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 6.2e-161 572.0 717 55.2
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 6.2e-161 572.0 741 52.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-159 567.4 741 57.6
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-159 567.0 718 53.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 2.6e-159 566.6 708 56.4
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.2e-157 559.7 707 54.5
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 6.0e-156 555.4 726 52.2
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.3e-155 554.3 752 56.0
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.3e-155 553.5 720 53.3
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.3e-154 549.3 739 52.4
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 5.6e-154 548.9 632 58.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.4e-152 544.3 469 65.9
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.3e-150 537.7 773 50.6
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.7e-148 530.0 741 56.0
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.5e-148 529.6 716 50.8
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.5e-146 523.5 765 49.2
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.3e-145 521.2 706 50.0
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.6e-145 520.8 692 51.6
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.1e-144 516.5 798 46.5
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 4.6e-140 502.7 722 48.3
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 8.2e-137 491.9 380 72.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.9e-130 470.7 612 53.3
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.5e-130 470.3 673 52.9
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 5.0e-118 429.5 447 60.4
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 4.8e-105 386.3 527 50.7
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.0e-99 368.6 731 41.6
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.3e-93 347.1 226 81.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 2.0e-90 337.8 236 78.8
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.3e-86 324.3 496 49.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.9e-85 321.2 496 49.6
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.0e-83 313.5 209 81.3
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 4.0e-83 313.5 209 81.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 3.7e-81 307.0 231 75.3
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.7e-81 307.0 229 73.4
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.9e-77 294.7 184 84.8
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.3e-65 255.4 431 45.2
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 8.3e-65 252.7 173 77.5
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.0e-62 245.7 524 38.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 4.9e-57 226.9 463 38.4
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-54 217.2 134 83.6
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 5.6e-53 213.4 432 41.9
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 8.1e-52 209.5 444 50.2
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.8e-44 184.5 310 45.8
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 2.6e-42 177.9 385 39.2
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.0e-38 166.0 208 55.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 5.6e-37 160.2 576 32.8
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 2.3e-30 138.3 108 66.7
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-29 135.6 86 86.0
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 6.2e-28 130.2 412 34.7
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 1.7e-25 122.1 210 44.8
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.1e-22 110.5 70 84.3
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.1e-22 110.5 70 84.3
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.1e-22 110.5 70 84.3
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.5e-21 108.2 72 80.6
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.3e-19 100.5 70 81.4
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.7e-17 95.5 243 33.3
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.4e-11 75.9 65 61.5
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.2e-10 72.8 447 25.7
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.6e-10 71.6 296 30.7
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 7.2e-08 63.5 355 24.2
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 9.4e-08 63.2 246 30.9
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.2e-07 62.8 49 75.5
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 7.9e-07 60.1 349 26.1
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.0e-06 59.7 358 24.6
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 1.8e-06 58.9 40 72.5
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 3.0e-06 58.2 335 24.5
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 5.1e-06 57.4 340 24.1
Glyma.08G053300 Glycine max HOM05D004897 ORTHO05D005928 5.1e-06 57.4 339 25.4
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 5.1e-06 57.4 332 24.4
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 6.7e-06 57.0 330 23.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 6.7e-06 57.0 337 24.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 6.7e-06 57.0 459 25.9
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 6.7e-06 57.0 338 25.7
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 8.8e-06 56.6 337 24.0
Lj4g0010445 Lotus japonicus HOM05D004897 ORTHO05D005928 8.8e-06 56.6 312 24.7


User provided reference genes

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