Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 8.3e-170 600.9 465 100.0
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 8.7e-151 537.7 448 96.0
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 2.0e-139 500.0 454 85.9
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 2.8e-133 479.6 448 81.5
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 5.8e-131 471.9 447 81.0
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 4.2e-129 465.7 453 85.2
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 3.4e-123 446.0 445 82.7
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 3.2e-121 439.5 448 78.1
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 2.1e-120 436.8 445 81.6
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 2.5e-118 429.9 447 79.0
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 1.2e-112 411.0 447 75.8
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 7.9e-112 408.3 447 73.2
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 5.7e-110 402.1 452 79.0
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 2.2e-109 400.2 447 67.8
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 4.8e-109 399.1 450 68.2
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 3.1e-108 396.4 446 74.7
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 4.1e-108 396.0 447 79.0
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 3.4e-107 392.9 448 79.0
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 5.9e-107 392.1 429 75.5
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 1.7e-106 390.6 459 73.6
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 2.9e-106 389.8 451 72.1
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 2.9e-106 389.8 460 73.3
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 3.8e-106 389.4 449 69.0
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 2.5e-105 386.7 482 70.1
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 7.2e-105 385.2 445 72.6
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 2.1e-104 383.6 429 74.4
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 1.1e-102 377.9 451 72.9
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 3.3e-102 376.3 461 69.2
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 4.4e-102 375.9 455 71.4
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 5.7e-102 375.6 447 75.2
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 8.2e-101 371.7 463 55.3
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.0e-99 367.1 446 67.7
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 4.5e-99 365.9 463 68.9
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 1.0e-98 364.8 465 69.2
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 1.7e-98 364.0 467 65.7
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 1.7e-98 364.0 198 91.9
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 3.8e-98 362.8 468 67.9
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 8.5e-98 361.7 449 75.5
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 8.5e-98 361.7 437 76.7
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 1.1e-97 361.3 459 71.5
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 1.1e-97 361.3 446 75.3
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 1.5e-97 360.9 455 69.5
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 4.2e-97 359.4 463 69.1
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 9.4e-97 358.2 446 74.9
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 1.6e-96 357.5 449 68.2
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 2.1e-96 357.1 462 69.7
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 2.1e-96 357.1 459 70.2
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 2.7e-96 356.7 458 71.2
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 3.6e-96 356.3 462 68.8
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 4.7e-96 355.9 447 76.5
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 1.0e-95 354.8 462 68.8
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 3.0e-95 353.2 445 69.2
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 5.2e-95 352.4 462 68.6
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 8.8e-95 351.7 456 67.3
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.1e-94 351.3 449 68.4
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 1.1e-94 351.3 458 73.6
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.5e-94 350.9 447 75.6
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 2.0e-94 350.5 459 73.0
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 2.0e-94 350.5 448 73.7
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.7e-93 347.4 447 75.6
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 2.2e-93 347.1 462 71.0
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 3.1e-92 343.2 460 66.3
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 5.3e-92 342.4 456 70.8
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 7.0e-92 342.0 460 69.8
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 7.0e-92 342.0 460 69.8
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 1.6e-91 340.9 459 68.4
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 2.7e-91 340.1 459 66.7
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 1.3e-90 337.8 449 69.5
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 2.2e-90 337.0 449 68.4
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 2.5e-89 333.6 446 65.5
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 1.6e-88 330.9 447 63.3
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 2.0e-86 323.9 444 64.4
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 7.5e-86 322.0 439 71.5
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 1.7e-85 320.9 461 67.2
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 6.3e-85 318.9 456 64.7
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 3.5e-83 313.2 451 65.0
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 4.5e-83 312.8 454 64.8
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 5.9e-83 312.4 434 69.4
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 7.7e-83 312.0 456 63.8
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 1.3e-82 311.2 458 64.0
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 1.7e-82 310.8 458 64.0
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 2.9e-82 310.1 370 75.9
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 6.5e-82 308.9 453 64.5
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 6.5e-82 308.9 453 64.2
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 1.1e-81 308.1 456 64.3
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 1.9e-81 307.4 456 63.8
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 5.5e-81 305.8 435 69.0
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 5.5e-81 305.8 363 62.0
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 2.7e-80 303.5 447 70.0
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 3.6e-80 303.1 456 63.4
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 3.6e-80 303.1 456 63.4
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 6.8e-79 298.9 458 64.4
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 3.4e-78 296.6 458 64.2
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 4.4e-78 296.2 434 68.7
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 2.8e-77 293.5 463 62.0
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 1.1e-76 291.6 453 61.6
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.4e-76 289.3 434 67.3
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 9.2e-76 288.5 459 63.6
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 7.3e-73 278.9 453 57.2
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.7e-69 267.7 460 48.3
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 8.3e-69 265.4 441 58.7
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 7.3e-65 252.3 180 72.2
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.8e-63 247.7 458 57.4
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.5e-62 244.6 469 55.9
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 7.5e-62 242.3 361 73.4
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 1.7e-61 241.1 211 62.6
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 2.2e-61 240.7 457 47.0
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.9e-60 237.7 459 57.7
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 6.6e-50 202.6 154 68.8
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.9e-44 184.5 360 60.6
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 1.9e-41 174.5 363 47.7
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 2.1e-40 171.0 322 63.7
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 2.8e-40 170.6 367 63.2
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 1.4e-39 168.3 179 79.9
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 3.2e-36 157.1 121 71.1
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 2.1e-35 154.5 360 36.7
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 9.6e-33 145.6 271 71.6
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 2.8e-32 144.1 413 45.3
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 4.8e-32 143.3 373 42.6
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 9.9e-30 135.6 268 52.2
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.5e-25 121.7 426 46.9
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.8e-24 116.7 110 58.2
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 6.2e-24 116.3 148 58.8
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.4e-20 105.1 435 47.8
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.9e-20 104.8 85 68.2
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 5.6e-17 93.2 155 37.4
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 5.6e-17 93.2 87 65.5
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 5.6e-17 93.2 173 38.2
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 6.9e-15 86.3 88 54.5
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 1.0e-13 82.4 59 66.1
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 6.5e-13 79.7 65 64.6
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 9.3e-12 75.9 66 62.1
vmacro18329 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.6e-08 65.1 162 34.6
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 6.3e-08 63.2 157 32.5
vmacro18327 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 6.3e-08 63.2 67 73.1
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 3.1e-07 60.8 93 34.4
COL.COLO4_13997 Corchorus olitorius HOM05D002901 ORTHO05D003183 2.0e-06 58.2 93 33.3
Thecc.01G124400 Theobroma cacao HOM05D002901 ORTHO05D003183 2.0e-06 58.2 93 33.3
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 2.0e-06 58.2 93 33.3
CARHR139180 Cardamine hirsuta HOM05D002901 ORTHO05D003183 3.4e-06 57.4 93 33.3
Gohir.A02G108506 Gossypium hirsutum HOM05D002901 ORTHO05D003183 3.4e-06 57.4 93 33.3
Gohir.A02G108507 Gossypium hirsutum HOM05D002901 ORTHO05D003183 3.4e-06 57.4 93 33.3
Gohir.D03G069704 Gossypium hirsutum HOM05D002901 ORTHO05D003183 3.4e-06 57.4 93 33.3
Gorai.003G090600 Gossypium raimondii HOM05D002901 ORTHO05D003183 3.4e-06 57.4 93 33.3
Sabra13G0098800 Salix brachista HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 33.3
SHI09181 Sapria himalayana HOM05D002901 ORTHO05D003183 4.5e-06 57.0 93 34.4
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 5.9e-06 56.6 93 31.2
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 31.2
MELO3C026620.2 Cucumis melo HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 34.4
CsaV3_3G043110 Cucumis sativus L. HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 34.4
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 32.3
Sed0026481 Sechium edule HOM05D002901 ORTHO05D003183 5.9e-06 56.6 93 32.3
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 7.6e-06 56.2 52 50.0
Thhalv10001406m.g Eutrema salsugineum HOM05D002901 ORTHO05D003183 7.6e-06 56.2 93 32.3
THA.LOC104804390 Tarenaya hassleriana HOM05D002901 ORTHO05D003183 7.6e-06 56.2 93 33.3
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 7.6e-06 56.2 52 50.0
CiPaw.16G005800 Carya illinoinensis HOM05D002901 ORTHO05D003183 1.0e-05 55.8 93 32.3
Lalb_Chr05g0222181 Lupinus albus HOM05D002901 ORTHO05D003183 1.0e-05 55.8 52 48.1
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 1.0e-05 55.8 52 50.0
Sp4g26110 Schrenkiella parvula HOM05D002901 ORTHO05D003183 1.0e-05 55.8 93 32.3


User provided reference genes

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